Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g2069 ATGTACTCCGGCAGCCAGTTTGATCCCACTTCCGCCTTCTCCGGCGGTGGATTCATGACCACCGAGGCTTCCCAGCCCAACGATTCATCCCTAACACCCGCAAAAAGCCGCGAAACTCAGGGTTTGGTTCCGGTAACAGTAAAGCAGATAAGCGAAGCCTCTCACACTGGTGATGAAAAGTCAAATTTCGTAATCAACGGTGTAGATGTGACCAATGTAACATTGGTAGGATTGGTGTCTGAGAAAGTTGAGAGAAACACTGACGTTAGTTTCGTTCTGGATGATGGAACAGGACGGATCAAGTGCCGAAGATGGGTTAATGAGGCTTTTGACACAAAGGAAATGGAAGAAATACGAGATGGTATGTATGTTCGTGTGTATGGGCATCTGAAAAGCTTTCAGAGTGTAAGGCAGGTTGTTGCTTTCTCAATTAGGCCTGTGATGAATTTTGATGAGATTTCTTTTCACTTCATTGACTGCATACACAATTACCTACACTCCAAAGTAAAGGTTGAAGGAATAACTCCTGCAATTCCTCCATCTTCAATCTCATCTAACACTCCTGCTAGAAATGCATCAAATGGATATCAGTCACCATCATCAAATCCTTTGTATGCACAATATAGCGTGGATGGACTCAAGGACTGTGATAAACTGGTTCTCGACTATCTGAATCAGCATTCAGACATGTCTGACGAAAGGGGAGTACACGTTGATGAATTATCTCGAGCGCTTAAACTTCCATTGGACAAGATCATGTTGTCGCTGAAGACTCTTGGAGACGACGGACTAGTATACTCCACCATTGATGACAACCATTACAAGCAAGCTTGA 834 0.4388 MYSGSQFDPTSAFSGGGFMTTEASQPNDSSLTPAKSRETQGLVPVTVKQISEASHTGDEKSNFVINGVDVTNVTLVGLVSEKVERNTDVSFVLDDGTGRIKCRRWVNEAFDTKEMEEIRDGMYVRVYGHLKSFQSVRQVVAFSIRPVMNFDEISFHFIDCIHNYLHSKVKVEGITPAIPPSSISSNTPARNASNGYQSPSSNPLYAQYSVDGLKDCDKLVLDYLNQHSDMSDERGVHVDELSRALKLPLDKIMLSLKTLGDDGLVYSTIDDNHYKQA 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g2069 277 SUPERFAMILY "Winged helix" DNA-binding domain 211 275 IPR036390 -
Dere05g2069 277 PIRSF RPA32 1 277 IPR014646 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Dere05g2069 277 MobiDBLite consensus disorder prediction 180 200 - -
Dere05g2069 277 CDD RPA2_DBD_D 72 165 - -
Dere05g2069 277 FunFam replication protein A 32 kDa subunit A-like 35 169 - -
Dere05g2069 277 SUPERFAMILY Nucleic acid-binding proteins 42 166 IPR012340 -
Dere05g2069 277 FunFam Replication protein A 32 kDa subunit 208 277 - -
Dere05g2069 277 Gene3D - 207 277 IPR036388 -
Dere05g2069 277 Pfam Replication protein A C terminal 190 272 IPR014892 -
Dere05g2069 277 PANTHER REPLICATION PROTEIN A-RELATED 6 275 IPR040260 -
Dere05g2069 277 MobiDBLite consensus disorder prediction 1 38 - -
Dere05g2069 277 Pfam OB-fold nucleic acid binding domain 73 146 IPR004365 GO:0003676
Dere05g2069 277 Gene3D - 38 169 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g2069 Dere-ChrDere05 30783708 30787435 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g2069 1 275 Core DNA Replication Machinery Family AT2G24490 48.561 1.67e-94 278
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere05g2069 05 30783708 30787435 Dere05g2069 05 30783708 30787435 ECH