Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g2059 ATGGTGGAGGTGGAGCTAAAATACCAGAAGCTGCCGTTCCTTCGCTGTGTTACACCTGGCTTTCATGCACCCACTCAAACTCTTTCGCATGTTCTTTCCCGGATCCTTCACCCCATGTTTTTGCCTCTCTTTCTCTTCAAAGTTGCAACTCATTTCTTTCTCTCAAGGCTGCAGGATTCTGAACTCTCAAGTCTCAAAACTCTGTACAAACAAGAAGCACAAAAAGCTTCAATTCCCCCGCCCTCATCGCTCTTTCTGTGGATTGCTTGGGGTTATGGAGGAACTAGAATTCTGATGATTGGTCTCCTATTTATTGTTTTCTGTGGATTTAAAGTGAATAAACAATTGATGGATGAATATTCTGGTAAACGAGCCATTGATGGAGTGGTAGTACCTAAAAAGGGAATGGCTCATGTATTTAGAGATACTGCTAATACTAGGGACCGTAATGGTCAGTTGTGCAGCCGAATTGGTTGCAGCAGCAGAGTCAACTCTCCTAAAGGTGCTCAAGTTGGTTCCTCTGAAAAAGGTAAATCTTTGAGACCTTCAATCCAGTCCCCTTCAAGTTGCAAGGAAACAATTGGAAGTTCTTCTAGAACTTTGCCTGGAAAATCCCTTATGAAGCCACGGAAAACATTATCTTATCGGTTAGAAGCTGTTACATGTGCAACTAGTGGTGTACAGGATGAACCAGAAGTTTCAGAGCTCATCCCACCACCTGAAAAAATTCAAAGAGGGCCTCAAGCTGAATTGGAAAATACGGAGTCTACTAATCTCATGCCAACGGAAGTAGGAAGCTCTAGTGTATCATCAAACACAAGATACCGGAGGAATCTTCATCAAAAGCCTGGATTGAGTGGTCAAGAATTTAAAAGTGCTGGTTCAGTGACACGTGCTGGAATCAACAGGTATGGGTTGAGGAACCTCAGATGCAATTCTATATCTGACGTTGTCCCAGAAGGTTGTTCATCATCAGATTCAACCCTGAATAGAAAGAAAGATTTCATAAAAAGGAGAAATTGTGAAGGGGAAAGTAGTTCCACTACTAGAGGTAAGAAGATGAGTGGGTCTTCATTGGATGGACAAAATTCTGGTTCCAGAAATGGCTTATCTATCTCTGACTCGAGAAGATTCAGAAATATTCCTCCTCAGAGAGACAATAGCAACATTGTATCAGTTAGAACTCGAAGATCACTCAGTGGTCATGCCAAGGGAAGGCTTTCTAGCCAAGCAAATGAAAACCCTGTTCCACCCAATGAGTCCCCTGTTACTATTTCACCTTTGCCTCATTCCAGTGACCATAATGCTCATGATTTATTACATCATGCCTTGCTGGAGACTCCTTTAAGTCGTCCAAGATCTTATAGTAGACCTAGACCAGGTAGTAGCAATGACCAATTATTTGGCATTATGCCTACATCTCCTTCAGAATATGGGATCACTCGTTCTCTAATAACTCGGGACAGCTTTGCACGCTGCAATATGGATGGTATTGCAGAGGTATTATTGGCACTTGAGAGGATTGAACATGATGAAGATCTAACACATGAGCAAATTCTTTTACTGGAGACAAACGTGTTCCTTAATGGACTAAACTTCTATGATCAGCATAGAGATATGCGATTGGATATTGATAACATGTCATACGAGGAACTATTGGCTCTAGAAGAGAGGATGGGTTCTGTAAGCACAGCTCTAACAGAGGAAGCACTTTCAGAATGCCTAAAGAGAAGTTTCTATCAATCTGCACCTTCTGATGATACGGCCGAGAGTTGCAAGGAGGATAAGGATGATGCAAAATGCAGCATCTGCCAGGAGGTATATGTGGAAAGAGAAGAAGTAGGGAGTCTACAGTGCGAGCATAGGTATCATGTGGGGTGCATACAGCAATGGCTGCGCCTGAAGAACTGGTGTCCGATTTGCAAAGCATCAGCGGCACCATCAAATTCATCTTCGAGTCCAACCATTTAA 1971 0.4262 MVEVELKYQKLPFLRCVTPGFHAPTQTLSHVLSRILHPMFLPLFLFKVATHFFLSRLQDSELSSLKTLYKQEAQKASIPPPSSLFLWIAWGYGGTRILMIGLLFIVFCGFKVNKQLMDEYSGKRAIDGVVVPKKGMAHVFRDTANTRDRNGQLCSRIGCSSRVNSPKGAQVGSSEKGKSLRPSIQSPSSCKETIGSSSRTLPGKSLMKPRKTLSYRLEAVTCATSGVQDEPEVSELIPPPEKIQRGPQAELENTESTNLMPTEVGSSSVSSNTRYRRNLHQKPGLSGQEFKSAGSVTRAGINRYGLRNLRCNSISDVVPEGCSSSDSTLNRKKDFIKRRNCEGESSSTTRGKKMSGSSLDGQNSGSRNGLSISDSRRFRNIPPQRDNSNIVSVRTRRSLSGHAKGRLSSQANENPVPPNESPVTISPLPHSSDHNAHDLLHHALLETPLSRPRSYSRPRPGSSNDQLFGIMPTSPSEYGITRSLITRDSFARCNMDGIAEVLLALERIEHDEDLTHEQILLLETNVFLNGLNFYDQHRDMRLDIDNMSYEELLALEERMGSVSTALTEEALSECLKRSFYQSAPSDDTAESCKEDKDDAKCSICQEVYVEREEVGSLQCEHRYHVGCIQQWLRLKNWCPICKASAAPSNSSSSPTI 656
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g2059 656 MobiDBLite consensus disorder prediction 162 203 - -
Dere05g2059 656 MobiDBLite consensus disorder prediction 249 272 - -
Dere05g2059 656 MobiDBLite consensus disorder prediction 226 272 - -
Dere05g2059 656 FunFam E3 ubiquitin-protein ligase arkadia 563 647 - -
Dere05g2059 656 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 563 647 IPR013083 -
Dere05g2059 656 MobiDBLite consensus disorder prediction 340 435 - -
Dere05g2059 656 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 210 646 IPR045191 GO:0061630
Dere05g2059 656 MobiDBLite consensus disorder prediction 347 431 - -
Dere05g2059 656 ProSiteProfiles Zinc finger RING-type profile. 601 642 IPR001841 -
Dere05g2059 656 SUPERFAMILY RING/U-box 595 646 - -
Dere05g2059 656 MobiDBLite consensus disorder prediction 450 471 - -
Dere05g2059 656 MobiDBLite consensus disorder prediction 456 471 - -
Dere05g2059 656 Pfam Ring finger domain 600 642 IPR001841 -
Dere05g2059 656 SMART ring_2 601 641 IPR001841 -
Dere05g2059 656 MobiDBLite consensus disorder prediction 162 207 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g2059 Dere-ChrDere05 30685494 30691361 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g2059 480 645 C3H Transcription Factor Family AT2G15530 40.361 7.69e-34 135
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere05g2059 05 30685494 30691361 Dere05g2059 05 30685494 30691361 ECH