LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dere05g2043	ATGTCTCGTGTGTACGTTGGTAACTTGGATTCAAGAGTTACTGAGAGAGATCTTGAAGATGAATTTCGTGTATTTGGAGTTATACGGAGTGTCTGGGTTGCACGGAGACCACCTGGTTATGCCTTTATTGATTTTGATGACCGCAGAGATGCACAGGATGCTATTCGTGAATTAGATGGTAAGAATGGTTGGAGGGTGGAGCTTTCTCACAACTCCAGAGGTGGAGGTGGTGGCCGTGGTCGCTCTGGTGGCTCTGATTTGAAATGTTATGAGTGTGGTGAACCTGGTCATTTTGCTCGTGAATGTCGTATGCGTGGTGGTGCAGGAAGACGACGTAGCCGCAGTCCACCTCGGTTCCGCAGGAGCCCAAGTTATGGGCGGAGGAGTTACAGTCCTCGTGGGGGTCGGTCCCCTAGGCGCCGCAGTTTGTCACCTCGCGGACGCAGCTATAGCAAATCGCCTCCTTACCGTGGACGTGAGGAGCTACCTAATGGAAATGGCGTAAGGGAACAGCGCCGAAGCAGAAGTTAA	531	0.5179	MSRVYVGNLDSRVTERDLEDEFRVFGVIRSVWVARRPPGYAFIDFDDRRDAQDAIRELDGKNGWRVELSHNSRGGGGGRGRSGGSDLKCYECGEPGHFARECRMRGGAGRRRSRSPPRFRRSPSYGRRSYSPRGGRSPRRRSLSPRGRSYSKSPPYRGREELPNGNGVREQRRSRS	176

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dere05g2043	176	PANTHER	SERINE/ARGININE RICH SPLICING FACTOR	2	158	-	-
	Dere05g2043	176	Pfam	Zinc knuckle	88	103	IPR001878	GO:0003676\|GO:0008270
	Dere05g2043	176	SMART	rrm1_1	3	69	IPR000504	GO:0003723
	Dere05g2043	176	CDD	RRM_SRSF3_like	3	71	-	-
	Dere05g2043	176	Gene3D	-	2	69	IPR012677	-
	Dere05g2043	176	MobiDBLite	consensus disorder prediction	66	88	-	-
	Dere05g2043	176	SUPERFAMILY	Retrovirus zinc finger-like domains	81	105	IPR036875	GO:0003676\|GO:0008270
	Dere05g2043	176	Gene3D	-	83	141	-	-
	Dere05g2043	176	FunFam	Serine/arginine-rich splicing factor RSZ22A	85	146	-	-
	Dere05g2043	176	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	2	73	IPR000504	GO:0003723
	Dere05g2043	176	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	4	61	IPR000504	GO:0003723
	Dere05g2043	176	SMART	c2hcfinal6	88	104	IPR001878	GO:0003676\|GO:0008270
	Dere05g2043	176	MobiDBLite	consensus disorder prediction	100	176	-	-
	Dere05g2043	176	ProSiteProfiles	Zinc finger CCHC-type profile.	88	103	IPR001878	GO:0003676\|GO:0008270
	Dere05g2043	176	FunFam	Serine/arginine-rich splicing factor 7	2	69	-	-
	Dere05g2043	176	SUPERFAMILY	RNA-binding domain, RBD	3	83	IPR035979	GO:0003676

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dere05g2043	Dere-ChrDere05	30470302	30473386	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dere05g2043	4	84	Eukaryotic Initiation Factors Gene Family	AT1G71770	34.483	3.57e-07	47.4

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Dere05g2043	05	30470302	30473386	Dere05g2043	05	30470302	30473386	ECH