Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Dere05g2038 | ATGCAACAGAGGCTCAAGCTTCAGCAACAGCAAGCCCTCATGCAGCAAGCCTTGCTTCAGCAACAGCAGATGTATCACCCCGGGATGCTAGCCGCTACAATGTCACAGATGGAGCCTATTCCAAGTGGAAATCTGCCTCCTGGTTTTGACACTTCTACATGCCGTAGTGTTTATGTAGGAAATATTCATGTAAATGTTACTGAAAAACTTCTTGCTGAAGTCTTTCAGAGTGCTGGTCCTCTTGCTGGTTGCAAGCTCATCAGAAAAGAAAAGTCCTCTTATGGTTTTGTGGATTACCATGATAGATCATCTGCGGCCCTTGCAATAATGACATTGCATGGACGCCAACTATATGGTCAGGCACTTAAGGTGAATTGGGCATATGCCAATACCCATAGGGAGGATACGTCAGGGCACTTCAATATATTTGTTGGTGATTTGAGTCCAGAGGTTACTGATGCAACTTTATTTGCATGCTTCTCAGTCTATCCTAGTTGTTCTGACGCAAAAGTTATGTGGGATCTCAAAACTGGTCGATCGAAAGGATATGGTTTTGTCTCTTTCCGTGATCAGCAGGATGCCCAAAGTGCCATCAATGATATGACTGGTAAGTGGCTGGGAAATAGGCAAATACGGTGCAACTGGGGAACCAAGGGTGCTGGTACAAATACCAATGAGGAAAAGAGCAATGACACCCAAAATGCTGTTGTGCTTACAAATGGATCATCAGATGGAGGTCAGGAATACAACAATGAGGATGCTCCTGAAAACAGTCCAGCCTATACCACTGTTTATGTTGGCAACCTTCCCCATGATGTAACACAAGCTGAACTCCACTATCAGTTCCATGCATTGGGGGCTGGAGTTATTGAGGAGGTCCGAGTTCAAAGGGATAAAGGTTTTGGATTTGTTAGATACAACATTCATGAAGAAGCAGAGTTGGCCATTCAGATGGCTAATGGAAGAATAATTCGTGGGAAAACAATGAAGTGTTCATGGGGTAGCAAGCCAACTCCTCCTGGAACAGTTTCAAATCCACTACCTCCTCCTGCTCAACCCTATCAAATCCTTCCCACAAATGGGATGAATCAAGGCTATTCTACCACTGAGTTATTGGCTTATCAGCGCCAACTGGCCATAAGTCAGGCTGCTGTATCTGGCCTTTCAGGTCAAGCCCTAGTGCATATGACTGGACAACATGGCCTAGCTGCTGCTTCCATTGGCTTAAGCTCTGGGGGAGCCCAAGCCATGTATGATGCATATTCTGGTAATTCTTCAAGGCAGCACCTCGTGTACTATCGTTAA | 1305 | 0.4521 | MQQRLKLQQQQALMQQALLQQQQMYHPGMLAATMSQMEPIPSGNLPPGFDTSTCRSVYVGNIHVNVTEKLLAEVFQSAGPLAGCKLIRKEKSSYGFVDYHDRSSAALAIMTLHGRQLYGQALKVNWAYANTHREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDAKVMWDLKTGRSKGYGFVSFRDQQDAQSAINDMTGKWLGNRQIRCNWGTKGAGTNTNEEKSNDTQNAVVLTNGSSDGGQEYNNEDAPENSPAYTTVYVGNLPHDVTQAELHYQFHALGAGVIEEVRVQRDKGFGFVRYNIHEEAELAIQMANGRIIRGKTMKCSWGSKPTPPGTVSNPLPPPAQPYQILPTNGMNQGYSTTELLAYQRQLAISQAAVSGLSGQALVHMTGQHGLAAASIGLSSGGAQAMYDAYSGNSSRQHLVYYR | 434 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Dere05g2038 | 434 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 262 | 336 | IPR000504 | GO:0003723 | |
| Dere05g2038 | 434 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 55 | 129 | IPR000504 | GO:0003723 | |
| Dere05g2038 | 434 | FunFam | Nucleolysin TIAR-like protein | 139 | 237 | - | - | |
| Dere05g2038 | 434 | PANTHER | TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED | 44 | 339 | - | - | |
| Dere05g2038 | 434 | FunFam | Nucleolysin TIAR-like protein | 1 | 138 | - | - | |
| Dere05g2038 | 434 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 264 | 330 | IPR000504 | GO:0003723 | |
| Dere05g2038 | 434 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 142 | 212 | IPR000504 | GO:0003723 | |
| Dere05g2038 | 434 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 57 | 123 | IPR000504 | GO:0003723 | |
| Dere05g2038 | 434 | Gene3D | - | 139 | 218 | IPR012677 | - | |
| Dere05g2038 | 434 | SMART | rrm1_1 | 56 | 125 | IPR000504 | GO:0003723 | |
| Dere05g2038 | 434 | SMART | rrm1_1 | 141 | 214 | IPR000504 | GO:0003723 | |
| Dere05g2038 | 434 | SMART | rrm1_1 | 263 | 332 | IPR000504 | GO:0003723 | |
| Dere05g2038 | 434 | CDD | RRM2_PUB1 | 139 | 218 | - | - | |
| Dere05g2038 | 434 | FunFam | Oligouridylate-binding protein 1C | 239 | 340 | - | - | |
| Dere05g2038 | 434 | Gene3D | - | 1 | 138 | IPR012677 | - | |
| Dere05g2038 | 434 | SUPERFAMILY | RNA-binding domain, RBD | 54 | 218 | IPR035979 | GO:0003676 | |
| Dere05g2038 | 434 | Gene3D | - | 239 | 340 | IPR012677 | - | |
| Dere05g2038 | 434 | SUPERFAMILY | RNA-binding domain, RBD | 250 | 344 | IPR035979 | GO:0003676 | |
| Dere05g2038 | 434 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 140 | 218 | IPR000504 | GO:0003723 | |
| Dere05g2038 | 434 | MobiDBLite | consensus disorder prediction | 219 | 255 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Dere05g2038 | Dere-ChrDere05 | 30404452 | 30410597 | Dispersed/Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Dere05g2038 | 56 | 336 | Eukaryotic Initiation Factors Gene Family | AT1G22760 | 25.000 | 9.42e-18 | 84.0 |