Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g2038 ATGCAACAGAGGCTCAAGCTTCAGCAACAGCAAGCCCTCATGCAGCAAGCCTTGCTTCAGCAACAGCAGATGTATCACCCCGGGATGCTAGCCGCTACAATGTCACAGATGGAGCCTATTCCAAGTGGAAATCTGCCTCCTGGTTTTGACACTTCTACATGCCGTAGTGTTTATGTAGGAAATATTCATGTAAATGTTACTGAAAAACTTCTTGCTGAAGTCTTTCAGAGTGCTGGTCCTCTTGCTGGTTGCAAGCTCATCAGAAAAGAAAAGTCCTCTTATGGTTTTGTGGATTACCATGATAGATCATCTGCGGCCCTTGCAATAATGACATTGCATGGACGCCAACTATATGGTCAGGCACTTAAGGTGAATTGGGCATATGCCAATACCCATAGGGAGGATACGTCAGGGCACTTCAATATATTTGTTGGTGATTTGAGTCCAGAGGTTACTGATGCAACTTTATTTGCATGCTTCTCAGTCTATCCTAGTTGTTCTGACGCAAAAGTTATGTGGGATCTCAAAACTGGTCGATCGAAAGGATATGGTTTTGTCTCTTTCCGTGATCAGCAGGATGCCCAAAGTGCCATCAATGATATGACTGGTAAGTGGCTGGGAAATAGGCAAATACGGTGCAACTGGGGAACCAAGGGTGCTGGTACAAATACCAATGAGGAAAAGAGCAATGACACCCAAAATGCTGTTGTGCTTACAAATGGATCATCAGATGGAGGTCAGGAATACAACAATGAGGATGCTCCTGAAAACAGTCCAGCCTATACCACTGTTTATGTTGGCAACCTTCCCCATGATGTAACACAAGCTGAACTCCACTATCAGTTCCATGCATTGGGGGCTGGAGTTATTGAGGAGGTCCGAGTTCAAAGGGATAAAGGTTTTGGATTTGTTAGATACAACATTCATGAAGAAGCAGAGTTGGCCATTCAGATGGCTAATGGAAGAATAATTCGTGGGAAAACAATGAAGTGTTCATGGGGTAGCAAGCCAACTCCTCCTGGAACAGTTTCAAATCCACTACCTCCTCCTGCTCAACCCTATCAAATCCTTCCCACAAATGGGATGAATCAAGGCTATTCTACCACTGAGTTATTGGCTTATCAGCGCCAACTGGCCATAAGTCAGGCTGCTGTATCTGGCCTTTCAGGTCAAGCCCTAGTGCATATGACTGGACAACATGGCCTAGCTGCTGCTTCCATTGGCTTAAGCTCTGGGGGAGCCCAAGCCATGTATGATGCATATTCTGGTAATTCTTCAAGGCAGCACCTCGTGTACTATCGTTAA 1305 0.4521 MQQRLKLQQQQALMQQALLQQQQMYHPGMLAATMSQMEPIPSGNLPPGFDTSTCRSVYVGNIHVNVTEKLLAEVFQSAGPLAGCKLIRKEKSSYGFVDYHDRSSAALAIMTLHGRQLYGQALKVNWAYANTHREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDAKVMWDLKTGRSKGYGFVSFRDQQDAQSAINDMTGKWLGNRQIRCNWGTKGAGTNTNEEKSNDTQNAVVLTNGSSDGGQEYNNEDAPENSPAYTTVYVGNLPHDVTQAELHYQFHALGAGVIEEVRVQRDKGFGFVRYNIHEEAELAIQMANGRIIRGKTMKCSWGSKPTPPGTVSNPLPPPAQPYQILPTNGMNQGYSTTELLAYQRQLAISQAAVSGLSGQALVHMTGQHGLAAASIGLSSGGAQAMYDAYSGNSSRQHLVYYR 434
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Dere05g2038 434 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 262 336 IPR000504 GO:0003723
Dere05g2038 434 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 55 129 IPR000504 GO:0003723
Dere05g2038 434 FunFam Nucleolysin TIAR-like protein 139 237 - -
Dere05g2038 434 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 44 339 - -
Dere05g2038 434 FunFam Nucleolysin TIAR-like protein 1 138 - -
Dere05g2038 434 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 264 330 IPR000504 GO:0003723
Dere05g2038 434 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 142 212 IPR000504 GO:0003723
Dere05g2038 434 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 57 123 IPR000504 GO:0003723
Dere05g2038 434 Gene3D - 139 218 IPR012677 -
Dere05g2038 434 SMART rrm1_1 56 125 IPR000504 GO:0003723
Dere05g2038 434 SMART rrm1_1 141 214 IPR000504 GO:0003723
Dere05g2038 434 SMART rrm1_1 263 332 IPR000504 GO:0003723
Dere05g2038 434 CDD RRM2_PUB1 139 218 - -
Dere05g2038 434 FunFam Oligouridylate-binding protein 1C 239 340 - -
Dere05g2038 434 Gene3D - 1 138 IPR012677 -
Dere05g2038 434 SUPERFAMILY RNA-binding domain, RBD 54 218 IPR035979 GO:0003676
Dere05g2038 434 Gene3D - 239 340 IPR012677 -
Dere05g2038 434 SUPERFAMILY RNA-binding domain, RBD 250 344 IPR035979 GO:0003676
Dere05g2038 434 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 140 218 IPR000504 GO:0003723
Dere05g2038 434 MobiDBLite consensus disorder prediction 219 255 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Dere05g2038 Dere-ChrDere05 30404452 30410597 Dispersed/Transposed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g2038 56 336 Eukaryotic Initiation Factors Gene Family AT1G22760 25.000 9.42e-18 84.0