LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dere05g2020	ATGGAACCGAAACCGGCCGGCGTCATGGCTACGTGCCCTTCGACTGAATATTTTTCTGCGTCGTCGATAACCTCCGTCGTCGACGGCGGCGACTTTGCACGGATCCCGTCGGAGTTGGATCTGCTAGAGTTTGTGAATAAGGCGTTGATCGCATCAGAAGTAACGAATGGATCCGTGAACGACGAGGACGTGAAACCAGGCGGGCTCCGGTATCAGAGTGACAACTGTTTCGCCGGCACGGATGCATATCTCGACGGCGTTTGCTCCGATGATTTCCACGCCGCTTTGGAAACCGTGAGTGGATTTTCAACTTGTGGTGGATTAGAAGATTTCAGGGCCCAAAACATCACTCCCTATCACTCTCCCATTTCTGCTACCATTGAGTCTCAGTCATCGATTTGTGTTGGAAGCCCTGTGTCAGCTAATAAACCAAACCCAAGAGATAATCAAGCAAAAGGAGCTTCGAGTGGTTCCTCACATGAGCAGTCTGACGAGGATGATGAAACAGGCCCTTGTGAACAGAGCATAGATCCCATTGATAAGCGGGATAGAAGGAAGAAATCTAATCGGGAGTCTGCAAGGAGATCAAGAAGAAGAAAACAAGCGCAGATGACTGAGCTTGAATCGCAGGTTGAACAACTGAGAGTGGAAAATGCAACTCTATATAAGCAGCTTACAGATGCCGGTCAACAATTTCATGAGGCTGATACAAATAACCGAGTGCTGAAATCAAATGTGGAAGCTTTGAGAGCCAAGGTGAAATTAGCTGAAGATATCGTGGCTCGTGGCTCCTTATCCACCTTAAACAACCAGCTTTTCCAGAATCACAGTCACCACCTAAACCCACCACCACAGCTAAACAATACTAGTCTGCGCCGAATGGCACACATGTCTCCAATCGTCAATGTCCATGGAAATGGTGCACAGAATTCAGGTCCTGGACTTGAGAACTTGGATATCAGTAATAGCAATTTCAATACTGCAGTCATGAGCGATGCAGTCATACTGTGTGACTGA	1017	0.4769	MEPKPAGVMATCPSTEYFSASSITSVVDGGDFARIPSELDLLEFVNKALIASEVTNGSVNDEDVKPGGLRYQSDNCFAGTDAYLDGVCSDDFHAALETVSGFSTCGGLEDFRAQNITPYHSPISATIESQSSICVGSPVSANKPNPRDNQAKGASSGSSHEQSDEDDETGPCEQSIDPIDKRDRRKKSNRESARRSRRRKQAQMTELESQVEQLRVENATLYKQLTDAGQQFHEADTNNRVLKSNVEALRAKVKLAEDIVARGSLSTLNNQLFQNHSHHLNPPPQLNNTSLRRMAHMSPIVNVHGNGAQNSGPGLENLDISNSNFNTAVMSDAVILCD	338

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dere05g2020	338	ProSiteProfiles	Basic-leucine zipper (bZIP) domain profile.	179	242	IPR004827	GO:0003700\|GO:0006355
	Dere05g2020	338	SMART	brlzneu	177	241	IPR004827	GO:0003700\|GO:0006355
	Dere05g2020	338	Coils	Coil	239	259	-	-
	Dere05g2020	338	Coils	Coil	190	224	-	-
	Dere05g2020	338	SUPERFAMILY	Leucine zipper domain	181	231	IPR046347	GO:0003700\|GO:0006355
	Dere05g2020	338	CDD	bZIP_plant_GBF1	195	233	IPR045314	GO:0003700\|GO:0006355
	Dere05g2020	338	ProSitePatterns	Basic-leucine zipper (bZIP) domain signature.	184	199	IPR004827	GO:0003700\|GO:0006355
	Dere05g2020	338	MobiDBLite	consensus disorder prediction	135	158	-	-
	Dere05g2020	338	Gene3D	-	180	236	-	-
	Dere05g2020	338	FunFam	BZIP transcription factor	180	230	-	-
	Dere05g2020	338	MobiDBLite	consensus disorder prediction	135	208	-	-
	Dere05g2020	338	PANTHER	BASIC LEUCINE ZIPPER 63	21	313	-	-
	Dere05g2020	338	Pfam	bZIP transcription factor	180	226	IPR004827	GO:0003700\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dere05g2020	Dere-ChrDere05	30207755	30211336	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dere05g2020	128	318	bZIP Transcription Factor Family	AT5G24800	52.404	1.44e-53	176

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	bZIP	Dere05g2020		bZIP_1	1.4e-12	CL0018