Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g2015 ATGCAACTTGAAGATCACAAGACTAACTATAAAGCATCAAATCCCCATTTGAACGAGAGTTTTCACTCCATGCAAAAGGAGAAGGAAGCAAGGAAAGAAGGGAGGGATAAGGAAATGGAAGGGAGTGGGGCGAAGGAGGAAACCCTACCACCAGGGTTTCGATTTCACCCGACAGATGAAGAACTCATCACTTGCTATCTCATCAACAAGATCTCTGATTCTAGTTTTACTGGAAGAGCTGTCACTGATGTTGATCTCAACAAATGCGAGCCATGGGAACTCCCTGGGAAGGCGAAGATGGGGGAGAAAGAGTGGTACTTCTTCAGTCTGAGAGATCGGAAGTACCCGACGGGAGTGAGAACCAACAGAGCGACCAACACAGGGTACTGGAAGACCACAGGCAAAGACAAGGAAATCCTTAACAGTGTTACATCGGAGTTAGTTGGCATGAAGAAGACTTTGGTTTTCTACAAAGGCAGAGCCCCCAGAGGTGAGAAAAGCAACTGGGTCATGCACGAATATCGCATTCACTCCAAGTCCACTCTCAGACACAACAAGGATGAATGGGTGGTTTGCAGAGTGTTCCAGAAGAGTGGTGGAGCAAAGAAGTACCCTTCCAACCACACAAGAGGGGTGAATCCTTATAGCCTGGAAATTGGTCCTAGCATGTTGGGACCATCAATGATGCATATGGCTGATCCTAATTCTGGTCACTTCCTTTATGGAAGGAACCATGTGAGTAGTGCTGCAGAACTAGCTGAAATTGCTAGGCTTTTGAGAGGAGGGGGTGCCTCAACTACTGGTCTCAACCTACCAATGCAACCCCATGGCCAGCTCAACTACCCTGCACCACCACCACCCCCAGGAGGCTTCACTATTTCCGGCCTCAATTTGAATCTCGCCGGAGGAGCAGTAGCATCCACCACGCAACCCGTTTTCCGGCCGATGAATCCGCATGATGTGGGTTCCAACATGATGACAGCTGGCAGTTCTCTTAATGGTGCAGACCATGTAGGTTATGGTAGCGCAGAAATGAGCAACCCTAATATTGGTCCAAGCAATAGGTATCTTGGGATGGACCATTGTGTGGACTTAGATAACTATTGGCCTTCCTACTAA 1119 0.4817 MQLEDHKTNYKASNPHLNESFHSMQKEKEARKEGRDKEMEGSGAKEETLPPGFRFHPTDEELITCYLINKISDSSFTGRAVTDVDLNKCEPWELPGKAKMGEKEWYFFSLRDRKYPTGVRTNRATNTGYWKTTGKDKEILNSVTSELVGMKKTLVFYKGRAPRGEKSNWVMHEYRIHSKSTLRHNKDEWVVCRVFQKSGGAKKYPSNHTRGVNPYSLEIGPSMLGPSMMHMADPNSGHFLYGRNHVSSAAELAEIARLLRGGGASTTGLNLPMQPHGQLNYPAPPPPPGGFTISGLNLNLAGGAVASTTQPVFRPMNPHDVGSNMMTAGSSLNGADHVGYGSAEMSNPNIGPSNRYLGMDHCVDLDNYWPSY 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g2015 372 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 46 222 - -
Dere05g2015 372 MobiDBLite consensus disorder prediction 1 53 - -
Dere05g2015 372 ProSiteProfiles NAC domain profile. 49 197 IPR003441 GO:0003677|GO:0006355
Dere05g2015 372 Pfam No apical meristem (NAM) protein 50 176 IPR003441 GO:0003677|GO:0006355
Dere05g2015 372 Gene3D NAC domain 58 200 IPR036093 GO:0003677|GO:0006355
Dere05g2015 372 MobiDBLite consensus disorder prediction 21 44 - -
Dere05g2015 372 SUPERFAMILY NAC domain 45 197 IPR036093 GO:0003677|GO:0006355
Dere05g2015 372 FunFam NAC domain-containing protein 100-like 58 201 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g2015 Dere-ChrDere05 30144674 30147205 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g2015 45 372 NAC Transcription Factor Family AT2G24430 52.722 6.68e-106 312
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Dere05g2015 NAM 1e-39 No_clan