Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g1994 ATGGAAGGTGACAAGACAACCCCAGCTCCATCAGATGGGCTCGGTGACGGTGTTCAGAAAATTAGAGCTCTTCATGGGCGCACTAGTGGCCCAACAAGGCGTTCTACAAAAGGACAGTGGACTCCTGAAGAGGATGAGATTTTGCGGAAGGCTGTTCAACGTTTTAAAGGAAAGAACTGGAAAAAAATAGCGGAGTGTTTCAAGGATAGAACGGATGTACAATGCCTACATAGGTGGCAGAAAGTCTTAAATCCTGAACTGGTCAAAGGTCCATGGTCTAAAGAGGAAGATGAAATAATAATTGATTTGGTGAATAAATATGGGCCCAAAAAGTGGTCTACTATTGCACAGCACTTACCTGGACGTATTGGTAAGCAATGCCGAGAAAGGTGGCATAATCATCTCAATCCTGCTATAAACAAAGAAGCATGGACTCAGGAAGAGGAGTTGGCTTTAATACGTGCGCATCAAATTTATGGGAATAGATGGGCCGAATTGACTAAGTTCTTGCCTGGAAGGACGGACAATGCTATAAAAAATCACTGGAACAGTTCTGTGAAAAAGAAATTGGATTCTTACTTGGCATCAGGTTTACTCACTCAGTTCCAAGATATACCCCATGTTGGACATCCAAATCAACCCATGGTTTCAACCTCTTCGAGATTGCTGTGTAGTGGGGATGATAGTGGTCAGAAGGGAATTGGAGAGGAAGTTTCAGAGTGTAGCCAAGAGTCAGCTAATGCTAGTCGTTTTCCATCTGCCAGAGAGATGACAAATGTTGTTCTACATACTAGAGAGGAAATCAAGCCAAATGAATATTCTAGTCTAGGAAAGGAGCAAAGTCCTAGTCAAGCATCTTGTTCAGAGCCTTATTATATATCATTAGACAATGTTACTATATCCAACCCAGACATGGCTCGTGAAGAGGCTTCCTCTTCTCAATTCATTGAGCAAAATTACTCACATGAGCCTGGAATTTCTGAAGGCAGAGATCGTGAGTTTCAAATACATGCTTTACCCAGTATTTCATCTTTAGACTTGGGTCAGGAATCCTCACATTTGCAGAGAGATTGTATAGTTTCTGATGAAAGCCATGACATTGTGAATGTTCAATTTCATACTTCAGCGGGGTTGGGTATTTCAACATCCATGGTATCCACGTCTATGAATTCTTCTAAATCAGAGCACATGTTGATATCTGATGAAGAATGCTGTAGAGTTCTATTTTCAGAGACAATAAATGATGGATGCTTTTCGTCTGGAGATTATAACAAAGGCGTTGATATTGTTTTGTCCGGATGCACTTCAAACCTTTGCCATTCATCTGACATCCAGATAACTGATGTTGGTAGTACCTCAGCTGCACTACAAACTTGTCCACCAAGATCTAATAATTTAATAGGATCTTCATGCTCCCAACCTTTTCCAACTGTTCCTTCACTAATTTCAGCTAATGATGGTAGACTAGTTTATACTGCTGAAGCTGCTCAGTTATATGGAGCTGATGATCAGCAATTTGTCTCCAGCGCACATGATAGTTTCATCTATCCAAACGACTCATCAATCTCACCTTGTACTGATGCTATAGATGGCGCTGAAATGCATGATGGACCAGATATTGTGAAGGATGCTTTAAGATTGGTCCCTGTAAATAATTTTGCTTATGCATCAGATACCAAGGAAACTTGTTATCCAATGGATGAAAAGACAAGTGTGCATACAGAACAGGAGGACACAGGATCTCTATGTTACGAACCTCCTCGATTTCCAAGCTTGGATGTTCCTTTCTTCAGCTGTGATCTTATACAATCTGGAGGCGATATGCAGCAAGAATTTAGTCCGCTTGGTATCCGCCGGCTTATGATGTCTTCTATGAATTGTCCAACTCCCCTGAGGTTGTGGGACTCACCTTCTCGTGATGATAGTCCAGATGCTTTGTTGAGAAGTGCCGCAAAAACTTTCACTGGTACACCATCCATATTAAAGAAACGATATCGAGACTTATCACCACTCTCAGATAAGAGGATTGAGAAGAAACTTGAGACTGACATGACATCCACATTGACTACAAATTTTTCACGTTTGGATGTCATGTTTGATGACAATGAGATGCTTCCTCCATCTTTGATAGAGAAAAATAAATCTGGAGCCTCTGTTGATGATAAAGAAAATTGTAGGCCAGCTTCGAAAGGAGAACATGTAGAGGGGAAAAATGAATCTACAATTTTGAGCAACAAAAAGTCAGATAAGGATACCGGTGATAAAGATTCTCAGTATTTCCAGCGACCTCTTGACATTGAGGGAAAGATGAAGGTTGATGTTGACGTTGATGCAACTGCTGAGATTGTGCAACAACCTTCTGGAGTCCTAGTTCAACATGATATGAATGACTTGATATTGTATTCTCCAAATCAAAGTCGTTTCATATCAGACAGAACTCACACTTCAAGTGCTAGAACTCCAAAAAACCTGAAGAGCAAAGGCTTGGAAGCAGCTCTGAATCAGAGTATGCCTCCAAAATCATCTTATGGAAATTCATGCGCAAGCGATAGCTCCCCTTCTGTTTTTGTAAAGGAGCATGAAATTCCTTCAGTTTCTGTTACTTGTGTGCAATCTCATTGTTCATCTGCCCCCGGGGAGAACTCTGTTGATCATACTGGACATGATGCTGGTTTTGAAGCATATAGCATATTTGGTGGAACACCTTTTAGAAGAAGCATTGAATCACCTTCAGCGTGGAAGTCTCCTTGGTTCATTAACACTTTTCTGCCTAGCCCTAGAGTTGATAATGAAATAACAATTGAGGATTTTGGGTTTTTCATGAGCCCGGGCGACAGAAGCTATGACGCAATCGGGTTGATGAAACAGGTAAAGGAACAAACTGCGGCTGCATATGCCAATGCTCAGGAGATTTTGGAAAACGAAACCCCTAAAGCAAAAGATGCATCAAAAAATGCCAGGGATGTGGACCAGGAAAACAAGGATCCTCATAATCAGCCTGGCAACTATTCTCAGTTGGCTTCAAATGCTTTGATGGAGAGACGCATACTTGACTTCAGTGAATGTGGAACCCCCGGGAAGGAGAACAACAAATCCACAGCTATGACCTTCTCAAGCCCCTCTTCCTATTTGTTGAAGGGGTGTAGATAG 3150 0.4149 MEGDKTTPAPSDGLGDGVQKIRALHGRTSGPTRRSTKGQWTPEEDEILRKAVQRFKGKNWKKIAECFKDRTDVQCLHRWQKVLNPELVKGPWSKEEDEIIIDLVNKYGPKKWSTIAQHLPGRIGKQCRERWHNHLNPAINKEAWTQEEELALIRAHQIYGNRWAELTKFLPGRTDNAIKNHWNSSVKKKLDSYLASGLLTQFQDIPHVGHPNQPMVSTSSRLLCSGDDSGQKGIGEEVSECSQESANASRFPSAREMTNVVLHTREEIKPNEYSSLGKEQSPSQASCSEPYYISLDNVTISNPDMAREEASSSQFIEQNYSHEPGISEGRDREFQIHALPSISSLDLGQESSHLQRDCIVSDESHDIVNVQFHTSAGLGISTSMVSTSMNSSKSEHMLISDEECCRVLFSETINDGCFSSGDYNKGVDIVLSGCTSNLCHSSDIQITDVGSTSAALQTCPPRSNNLIGSSCSQPFPTVPSLISANDGRLVYTAEAAQLYGADDQQFVSSAHDSFIYPNDSSISPCTDAIDGAEMHDGPDIVKDALRLVPVNNFAYASDTKETCYPMDEKTSVHTEQEDTGSLCYEPPRFPSLDVPFFSCDLIQSGGDMQQEFSPLGIRRLMMSSMNCPTPLRLWDSPSRDDSPDALLRSAAKTFTGTPSILKKRYRDLSPLSDKRIEKKLETDMTSTLTTNFSRLDVMFDDNEMLPPSLIEKNKSGASVDDKENCRPASKGEHVEGKNESTILSNKKSDKDTGDKDSQYFQRPLDIEGKMKVDVDVDATAEIVQQPSGVLVQHDMNDLILYSPNQSRFISDRTHTSSARTPKNLKSKGLEAALNQSMPPKSSYGNSCASDSSPSVFVKEHEIPSVSVTCVQSHCSSAPGENSVDHTGHDAGFEAYSIFGGTPFRRSIESPSAWKSPWFINTFLPSPRVDNEITIEDFGFFMSPGDRSYDAIGLMKQVKEQTAAAYANAQEILENETPKAKDASKNARDVDQENKDPHNQPGNYSQLASNALMERRILDFSECGTPGKENNKSTAMTFSSPSSYLLKGCR 1049
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g1994 1049 CDD SANT 91 135 IPR001005 -
Dere05g1994 1049 MobiDBLite consensus disorder prediction 974 995 - -
Dere05g1994 1049 MobiDBLite consensus disorder prediction 1021 1049 - -
Dere05g1994 1049 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 32 83 IPR017930 -
Dere05g1994 1049 FunFam Transcriptional activator Myb isoform A 36 88 - -
Dere05g1994 1049 MobiDBLite consensus disorder prediction 715 761 - -
Dere05g1994 1049 Gene3D - 89 140 - -
Dere05g1994 1049 ProSiteProfiles Myb-like domain profile. 84 135 IPR001005 -
Dere05g1994 1049 SUPERFAMILY Homeodomain-like 86 182 IPR009057 -
Dere05g1994 1049 SUPERFAMILY Homeodomain-like 33 89 IPR009057 -
Dere05g1994 1049 MobiDBLite consensus disorder prediction 1 42 - -
Dere05g1994 1049 MobiDBLite consensus disorder prediction 1025 1043 - -
Dere05g1994 1049 FunFam Transcriptional activator Myb isoform A 89 141 - -
Dere05g1994 1049 MobiDBLite consensus disorder prediction 973 1004 - -
Dere05g1994 1049 FunFam Transcription factor MYB3R-2 142 204 - -
Dere05g1994 1049 Gene3D - 36 88 - -
Dere05g1994 1049 CDD SANT 40 83 IPR001005 -
Dere05g1994 1049 Gene3D - 142 201 - -
Dere05g1994 1049 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 140 190 IPR017930 -
Dere05g1994 1049 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 84 139 IPR017930 -
Dere05g1994 1049 PANTHER MYB PROTEIN-RELATED 37 122 - -
Dere05g1994 1049 SMART sant 140 188 IPR001005 -
Dere05g1994 1049 SMART sant 36 85 IPR001005 -
Dere05g1994 1049 SMART sant 88 137 IPR001005 -
Dere05g1994 1049 MobiDBLite consensus disorder prediction 706 761 - -
Dere05g1994 1049 CDD SANT 143 183 IPR001005 -
Dere05g1994 1049 ProSiteProfiles Myb-like domain profile. 32 83 IPR001005 -
Dere05g1994 1049 Pfam Myb-like DNA-binding domain 89 135 IPR001005 -
Dere05g1994 1049 Pfam Myb-like DNA-binding domain 141 183 IPR001005 -
Dere05g1994 1049 Pfam Myb-like DNA-binding domain 37 83 IPR001005 -
Dere05g1994 1049 ProSiteProfiles Myb-like domain profile. 136 186 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g1994 Dere-ChrDere05 29875045 29880360 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g1994 9 1049 MYB Transcription Factor Family AT4G32730 44.167 0.0 748
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Dere05g1994 Myb_DNA-binding 3.1e-15 CL0123