Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g1976 ATGGAGAGGATCATTGGAGGGAAGTTTAAGATGGGTCGGAAGATAGGGAGCGGGTCGTTCGGTGAAATTTATATTGCTGCCCATATCGAGACTTCTGAGATTGTAGCCGTGAAGATGGAGAGCAAGAAGACTAGACATCCCCAACTACTGTATGAGGCCAAGTTATATAATATTCTTCAAGGAGGAAGTGGTATTCCAAATATGAAATGGTGTGGTGTTGACAGAGACAATAATGTTCTAGTCTTGGATCTTCTGGGACCGAGTCTTGAGGACCTTTTTGTATACAGCGGGAGGAAGTTTTCATTAAAAACAGTTCTGATGCTGGCGGATCAGATGCTTACAAGGATAGAATATTTGCATTCTAAGGGGTTTTTGCATAGAGACATCAAACCAGACAACTTCCTTATGGGTCTAGGGAGAAAAGCAAATCAGGTTTATATGATTGATTTTGGACTTGCAAAAAGATACAATGATCCTACGACAAATAAGCATATTACTTACAGAGAGAACAAAAATTTAACAGGCACTGCGCGTTATGCAAGTTGTAACACTCATTTAGGAATTGAGCAAAGTAGACGGGATGATTTGGAGTCTCTTGGCTATGTTCTTTTGTACTTCTTAAGAGGAAGCCTTCCTTGGCAGGGTCTGAAAGCTGCCACTAAAAAGCAAAAATATGACAAGATTTGCGAGAAGAAGTTATCCACTTCCATTGAGGTGCTCTGCAAGTCGTATCCTGTGGAATTTGCTTCTTACTTCCATTATTGCCACTCTCTGACATTTGATCAACGTCCAGATTATGGATTCTTGAAGCGCCTGTTTCGTGATCTATTTACTCGTGAAGGATATGAGCCTGACAACATATTTGACTGGACCATCCTTAAATATCAACAGTTGCAGCAGACAAAGATGAAGGATCAATCTACTCCTGCTGCTGATGTGCCGAGCAGTTTAGAACCAAACGATGTTGATGAGAATAAAGGTGTTAAGGGTTCTGCTCCAATTGCTGAAGCTAGGCCATCAACAAATGTCAATGCACGTGCGAATATGCAGATTAGGTCGTCACACGAGGTTCAAAATCTGAGTGCCGCGAATCAGACTGAGAAACTTACCGTGAAAAATGGTCCATCAACTTCATCTGCGATGCCCAGACGCGCTGAAAATGTGTCAAAAGCAGAGAAGCCAATAGGAAGCTCGAATCTGGGTCGTGTATTTGGGCATAACACCGGTACTTCAAGCAGCTGGATTCCTTCACTACGCCGCATTTCTTCGGCCAAAAAATAG 1281 0.4231 MERIIGGKFKMGRKIGSGSFGEIYIAAHIETSEIVAVKMESKKTRHPQLLYEAKLYNILQGGSGIPNMKWCGVDRDNNVLVLDLLGPSLEDLFVYSGRKFSLKTVLMLADQMLTRIEYLHSKGFLHRDIKPDNFLMGLGRKANQVYMIDFGLAKRYNDPTTNKHITYRENKNLTGTARYASCNTHLGIEQSRRDDLESLGYVLLYFLRGSLPWQGLKAATKKQKYDKICEKKLSTSIEVLCKSYPVEFASYFHYCHSLTFDQRPDYGFLKRLFRDLFTREGYEPDNIFDWTILKYQQLQQTKMKDQSTPAADVPSSLEPNDVDENKGVKGSAPIAEARPSTNVNARANMQIRSSHEVQNLSAANQTEKLTVKNGPSTSSAMPRRAENVSKAEKPIGSSNLGRVFGHNTGTSSSWIPSLRRISSAKK 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g1976 426 FunFam Casein kinase I isoform delta-like 1 339 - -
Dere05g1976 426 MobiDBLite consensus disorder prediction 357 426 - -
Dere05g1976 426 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Dere05g1976 426 MobiDBLite consensus disorder prediction 401 426 - -
Dere05g1976 426 MobiDBLite consensus disorder prediction 357 384 - -
Dere05g1976 426 PANTHER CASEIN KINASE-RELATED 13 373 - -
Dere05g1976 426 Gene3D Transferase(Phosphotransferase) domain 1 1 338 - -
Dere05g1976 426 MobiDBLite consensus disorder prediction 303 343 - -
Dere05g1976 426 Pfam Protein kinase domain 10 227 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere05g1976 426 ProSiteProfiles Protein kinase domain profile. 9 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere05g1976 426 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
Dere05g1976 426 SUPERFAMILY Protein kinase-like (PK-like) 4 290 IPR011009 -
Dere05g1976 426 SMART serkin_6 9 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g1976 Dere-ChrDere05 29702744 29709774 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g1976 9 223 AGC Kinase Gene Family AT3G08720 26.027 1.62e-14 73.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Dere05g1976 Pkinase 2.8e-29 CL0016