Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g1973 ATGCTTTTAGTGACGCTGACGTTCCTTCCTATTATCTCTTGGCGAGTAGTGCCTAAGCCTCGTCAAGCCATGGCGAAAATCGCTCTCGGAACCGCTCGAGAGGCTACCCAGACCGACTGCATTCACGCCCTCGTCGTTGAGTTCATTACCACCTTCCTTTTCGTCTTCGCCGGTGTTGGTTCTGCCATGGCCGTCGATAAGCTGGGTGCTGATGCACTGGTGGGGCTGTTAGCTGTGGCCGTGGCACATGCACTCGTGGTGGCCACCATGATTTCCGCCGGCCACATTTCCGGTGGCCACCTCAACCCAGCCGTCACCCTCGGTCTCCTCGTCGGCGGCCACATCACCGTCTTCCGTTCCCTCCTTTATTGGATCGATCAATTACTCGCATCTGCACTCGCTTGTTATCTTCTTCACTACCTCTCTGGCGGACTGACAACTCCAGTTCATACGCTGGCAAGTGGAGTGGGGTACGCTCAGGGAGTGATTTGGGAAATTATCCTCACATTTTCTTTGTTGTTCGCTGTGTATGGTACCATGGTGGATCCCAATAAGGGAGCAACTGGTGGGATTGGCCCCACAATGGTTGGGTTTGTGGTGGGAGCTAACATCCTCGCTGGTGGGGCTTTTTCTGCTGCTTCCATGAACCCAGCAAGATCCTTTGGCCCTGCCTTGGTCAGTGGAAACTGGACTGATCACTGGGTTTACTGGGTTGGACCACTCATTGGTGGTGGCCTTGCTGGCTTCATCTATGAGACCTTCTTCATTAACAGGTCTCATGTTCCCCTTCCTCCAGATGAGGAAAGCTACTAG 813 0.5387 MLLVTLTFLPIISWRVVPKPRQAMAKIALGTAREATQTDCIHALVVEFITTFLFVFAGVGSAMAVDKLGADALVGLLAVAVAHALVVATMISAGHISGGHLNPAVTLGLLVGGHITVFRSLLYWIDQLLASALACYLLHYLSGGLTTPVHTLASGVGYAQGVIWEIILTFSLLFAVYGTMVDPNKGATGGIGPTMVGFVVGANILAGGAFSAASMNPARSFGPALVSGNWTDHWVYWVGPLIGGGLAGFIYETFFINRSHVPLPPDEESY 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g1973 270 PRINTS Major intrinsic protein family signature 164 182 IPR000425 GO:0015267|GO:0016020|GO:0055085
Dere05g1973 270 PRINTS Major intrinsic protein family signature 197 219 IPR000425 GO:0015267|GO:0016020|GO:0055085
Dere05g1973 270 PRINTS Major intrinsic protein family signature 82 106 IPR000425 GO:0015267|GO:0016020|GO:0055085
Dere05g1973 270 PRINTS Major intrinsic protein family signature 119 138 IPR000425 GO:0015267|GO:0016020|GO:0055085
Dere05g1973 270 PRINTS Major intrinsic protein family signature 234 254 IPR000425 GO:0015267|GO:0016020|GO:0055085
Dere05g1973 270 PRINTS Major intrinsic protein family signature 42 61 IPR000425 GO:0015267|GO:0016020|GO:0055085
Dere05g1973 270 Gene3D Glycerol uptake facilitator protein. 24 264 IPR023271 -
Dere05g1973 270 FunFam Probable aquaporin TIP1-1 25 267 - -
Dere05g1973 270 SUPERFAMILY Aquaporin-like 34 264 IPR023271 -
Dere05g1973 270 CDD MIP 43 254 IPR000425 GO:0015267|GO:0016020|GO:0055085
Dere05g1973 270 ProSitePatterns MIP family signature. 100 108 IPR022357 -
Dere05g1973 270 PANTHER AQUAPORIN-8 27 260 IPR034294 -
Dere05g1973 270 Pfam Major intrinsic protein 36 251 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g1973 Dere-ChrDere05 29685678 29687397 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g1973 24 268 Major Intrinsic Protein MIP AT2G25810 77.959 5.58e-129 364