Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g1970 ATGGAGCTTCAGTTAGGTCTGGCTCTCCCAACTCAGAACCCCATCGAGGGTTTCAACCTAACCAATCATGGCTTGAAGAGTTCAGAATTATGGAGGCCCAGTTTCCGTCTAGAAAGCAACGAGCATGTCAAAAACAAGCGTAGCTTTGAAGAGTCATTTGGAGAGTCTTCGAAACCTCTGCCTTTACTGGTATGGAGCGGACAGCCCAACGAGGAAGACGACCGTAGTGGAAAGAAAAACAGAAACACTTATCCAGAAAACAAGAATAACGAAGAAAAAAACCGTGTAGTGGGATGGCCGCCCATTAAGTCATGGAGGAAAAAGAAACTCCATCGGCAGCAACCAAGAGCCCAGATCAGGAACGATAGGATGCCAGCTGATAGTGGAAGTAGAGGATCAAACTCGTTATTTGTTAAGGTTAAGATGGAAGGGGTAACTATAGGAAGGAAGATCGATTTGAGGCTGTATAGCTCTTATCAGACTCTTACAAATAAGTTAATTAGTATGTTTGCTAAATACCAAAAACTCGAGGAAGATGGGGCAAAGTATACACTCACCTATCAAGACGGCGAAGGGGACTGGCTGCTCGCTGGAGACGTTCCATGGCAATCCTTTGTTGATTCCGTCAAGCGTTTGCAGATACTAAGGAATGGCATTGAAGAAACTACTTGA 672 0.4464 MELQLGLALPTQNPIEGFNLTNHGLKSSELWRPSFRLESNEHVKNKRSFEESFGESSKPLPLLVWSGQPNEEDDRSGKKNRNTYPENKNNEEKNRVVGWPPIKSWRKKKLHRQQPRAQIRNDRMPADSGSRGSNSLFVKVKMEGVTIGRKIDLRLYSSYQTLTNKLISMFAKYQKLEEDGAKYTLTYQDGEGDWLLAGDVPWQSFVDSVKRLQILRNGIEETT 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g1970 223 Gene3D - 130 222 - -
Dere05g1970 223 SUPERFAMILY CAD & PB1 domains 129 214 - -
Dere05g1970 223 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 3 217 IPR003311 GO:0005634|GO:0006355
Dere05g1970 223 Pfam AUX/IAA family 39 217 IPR033389 -
Dere05g1970 223 Coils Coil 159 179 - -
Dere05g1970 223 MobiDBLite consensus disorder prediction 41 132 - -
Dere05g1970 223 ProSiteProfiles PB1 domain profile. 135 222 IPR000270 GO:0005515
Dere05g1970 223 MobiDBLite consensus disorder prediction 71 93 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g1970 Dere-ChrDere05 29602620 29603702 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g1970 138 214 B3 DNA Binding Superfamily AT3G61830 41.026 2.80e-12 63.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Dere05g1970 AUX_IAA 9.6e-28 CL0072