Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g1948 ATGTGGTCTTTCTTTTCTGCTTCTGTTTTCGGTTCTGCTTGTGAACTCTTCCGAGCACATTGGTATAATGTGCCTAATAATAAGGACAAAGAGCCAGACTCTAGAATGTATAGGCGTCTCTTGCTCAGAAGACCATCTGTCCTTGTGGGCCTCGCCTGCATGCGACCAGACATTGACGCCTATAGACCAATTATGCTCAACTGGTATTCTGTAAGACAAAGAGGGATTCTGGATATGTCTAACCTCAAGAAAGAGATTGTCTTCTTAATTTTACAGTTTGTTAAAGAGGAAGGTTTCAAGGAAACTGCACATACGCTTGAGCGTGAAAGTGGTTACTACTTTGACATAAAACATTTTGAGGAGATGGTGCTTGCTGGGAAATGGGAGGACGCTGAGACCTATCTATCTTGTTTTACAAGTGTAGATGACAATAGGCACTCAACCAAAATATACTTTGAATTGAGGAAACAGAAATTCCTTGAGGCATTGGACATAAACGATCGTGCCAAGGCTCTAGATATCCTCATGACGGATCTAAAAGTTTTTTCCCCAGGACATGAAAAGCTGCTCAACGAAATGACTCAGTTGTTGACAATCAATAATATAAGGGAACATGAATCACTTTCTGCCTATGAAGACGCAAATTCTGTGAGGAAGATTGTGATGGAGGATCTTAAGAAAATCATTGAGGCAAATCCACTGTTGAATGAAAAGCTTGAGTTTCCTGTCATAAGATCTCAAAGGCAGAAAACTAATTTTATTATCCAATTTGTCAGCTTAAACTGGCAACATCTACTTTGCAAAGACCCCCTTCCCGACCCTGTTATACAAACCCTATTCGCAGACCATGTTTGTAAGCCATGTCCGAATCAACCAGATCCTGTTAACAGTGATGACAGTTGCAACCCATCTACTGTAACAGATTCTGCACTCCTCGCTGCTGCTAACAAAAGCCCAGAAAAATCTGTGGAGGTTCTTGAGGATCCTAATCAAATGTCTATGGGAAGGCCCTGCAAGCCTTTAGGCAAGGTAACATCACCCATGGAAGATGACTTGCCCAAGACTGTTGTTCTGACATTGGAAGATAATTGGCCTGCTACTAGCATGGATTTTCATCCTACTTGGCATACTCTTCTTCTAGTTGGAAATCAAAATGGCAATATAGGACTTTGGGATGTTGCTTTCGGTGATAAGTTGCTTTTTGTAAATTTTGAAGTTTGGGACATTGAAGCATACTCAACCAAATTCAAGGTAGCCCTGGAAGAAGACTTGCATATTTCTGTTAACAGAGTCATTTGGAGCTCTGATGGTTCATCTTTTGGTAAGGATGTTCAGCTACTTTCAGTTGAAGCTCATGATGGCAGTGTCAATGATCTAGCATTTTCTTCTGTTGATGAGCAATTATTAATCATAACATGTGGTGACGACAAGACAGTAAAGGTGTGGGATGCATTTACTGGTGAGCAATTTTATACTTTTGATGGTCACGATGCTCCTGTTTATTCTATCTGTCCCCACATGAAGCAACATATTCATGCATGGTTATACGATACTCTTGGCCCTAGAGTTGATTATGATGCCCCTGGTTGTGGATGCACTACATTGGCTTACAGTGCTGATGATCAAAGGGACCAAATTTTGGCTGTTGGTGATGATCATATGGTTAAATTTTGGGATATGGATAATGTCGAGCTGTGGACAAGCACTGATGCCAATGGAAGCCTACCAACATATCCATGCATTTGCTTCAACAAAGAGGGCAGATTACTGGCTGTTACTGCAAATGAAAATAAAATCAAAATCTTAGCATCTGATTATGATGTTTCACAGGTTCAAACCGACACTCATTCTGTTCTCTCTGAAACCACGGCAAAGAATGAAAGTGAAGTCGTGGATAGCATGGAAACTAATTTAACTGAAGAAGCCAGTAACACATCAAAGTTTTGGAATCTCTTTGAAATTTCTGAACCATCACAGTGCCAGTTCTTGCAGCTCCCTGTTCATTCCAAAGTAAACAAGATCGTCAGATTGAGTTACACCAATTCTGGAAATGCCATCCTGGCATTAACATCAAACGGTATACATTTACTTTGGAAATGGCCAGAAAATGAACAGTGTATGCACAATGACCTTGCAAGTATCGACCCCGGAGAATCATTAGCCTGTTTTGCAATATCAAAAAATGATTCCTATCTCATGTCAACATCAGGCGGTATAATCTCCTTGTTCAACATGTTGACATTTAAGACTTTGACAACCTTCATGTCCCCCCCACCTAAGGCAACATCTATTGCCTTCTACCCTCGAGATAATAATATACTTGCTATAGGCTTCAATGATTCCAGAATACTTATATATAACGTCCGTACATTCAAGATTATGGGAAAGCTTAAGGGTCACTCTGAAAGAGTTACTTCCCTTGCCTTCTCAAACACTTTAAATGTTCTTGTTTCTGCTGATCTTCATGGTCAGATTTTCGTATGGAATATTCACGGGTGGGTAAAGGAGAAAAATAGGTACTTGCAGATACATGCTCGGAAGGAGCCAGAAGTACTATCTGATACTCACATTCAGTTTCACCTGGATGAGATACGCTTCCTTGCTGTACAAGATAGTCATCTTGCAATTTATGAAGCAACAGAATTAACTTGTGTCAACCAGTGGCTTCCAGTACTTCCTGTGGTTATCTCCCAAGCAACTTTCTCATCTGATTGCCAGACCGTGTATGCCGGTTATGTTGACGGGACTGTCACAATATTTGATGCTTCAAATCTTCAACCTCTTTGTAGGATAAACCCCACCGCTTACCTTTCCTCCAATTCAAGTGAGAGCATCTACCCACTTGCTGTGGCTGCAAATCCAATGAAACCAAGGCAGTTTGCTATGGGGCTGACAAATGGTAGTGTTTATGTGTTAGAGCCAGAGCCAGGACTTGATTGGACTAGATTTTCACATGATGATAAGGAGCCAGCCATGACCAGGGTTGGGGGAGTTGCTGAATCTGATGGGAATTGA 3015 0.4106 MWSFFSASVFGSACELFRAHWYNVPNNKDKEPDSRMYRRLLLRRPSVLVGLACMRPDIDAYRPIMLNWYSVRQRGILDMSNLKKEIVFLILQFVKEEGFKETAHTLERESGYYFDIKHFEEMVLAGKWEDAETYLSCFTSVDDNRHSTKIYFELRKQKFLEALDINDRAKALDILMTDLKVFSPGHEKLLNEMTQLLTINNIREHESLSAYEDANSVRKIVMEDLKKIIEANPLLNEKLEFPVIRSQRQKTNFIIQFVSLNWQHLLCKDPLPDPVIQTLFADHVCKPCPNQPDPVNSDDSCNPSTVTDSALLAAANKSPEKSVEVLEDPNQMSMGRPCKPLGKVTSPMEDDLPKTVVLTLEDNWPATSMDFHPTWHTLLLVGNQNGNIGLWDVAFGDKLLFVNFEVWDIEAYSTKFKVALEEDLHISVNRVIWSSDGSSFGKDVQLLSVEAHDGSVNDLAFSSVDEQLLIITCGDDKTVKVWDAFTGEQFYTFDGHDAPVYSICPHMKQHIHAWLYDTLGPRVDYDAPGCGCTTLAYSADDQRDQILAVGDDHMVKFWDMDNVELWTSTDANGSLPTYPCICFNKEGRLLAVTANENKIKILASDYDVSQVQTDTHSVLSETTAKNESEVVDSMETNLTEEASNTSKFWNLFEISEPSQCQFLQLPVHSKVNKIVRLSYTNSGNAILALTSNGIHLLWKWPENEQCMHNDLASIDPGESLACFAISKNDSYLMSTSGGIISLFNMLTFKTLTTFMSPPPKATSIAFYPRDNNILAIGFNDSRILIYNVRTFKIMGKLKGHSERVTSLAFSNTLNVLVSADLHGQIFVWNIHGWVKEKNRYLQIHARKEPEVLSDTHIQFHLDEIRFLAVQDSHLAIYEATELTCVNQWLPVLPVVISQATFSSDCQTVYAGYVDGTVTIFDASNLQPLCRINPTAYLSSNSSESIYPLAVAANPMKPRQFAMGLTNGSVYVLEPEPGLDWTRFSHDDKEPAMTRVGGVAESDGN 1004
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g1948 1004 ProSiteProfiles Trp-Asp (WD) repeats profile. 797 830 IPR001680 GO:0005515
Dere05g1948 1004 ProSiteProfiles Trp-Asp (WD) repeats profile. 449 492 IPR001680 GO:0005515
Dere05g1948 1004 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 449 483 - -
Dere05g1948 1004 Gene3D - 662 995 IPR015943 GO:0005515
Dere05g1948 1004 SMART ctlh 112 170 IPR006595 -
Dere05g1948 1004 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 797 830 - -
Dere05g1948 1004 Gene3D - 508 649 IPR015943 GO:0005515
Dere05g1948 1004 SMART Lish 82 114 IPR006594 GO:0005515
Dere05g1948 1004 SMART WD40_4 518 559 IPR001680 GO:0005515
Dere05g1948 1004 SMART WD40_4 881 921 IPR001680 GO:0005515
Dere05g1948 1004 SMART WD40_4 442 483 IPR001680 GO:0005515
Dere05g1948 1004 SMART WD40_4 707 744 IPR001680 GO:0005515
Dere05g1948 1004 SMART WD40_4 747 787 IPR001680 GO:0005515
Dere05g1948 1004 SMART WD40_4 353 392 IPR001680 GO:0005515
Dere05g1948 1004 SMART WD40_4 790 829 IPR001680 GO:0005515
Dere05g1948 1004 Pfam WD domain, G-beta repeat 793 829 IPR001680 GO:0005515
Dere05g1948 1004 Pfam WD domain, G-beta repeat 447 483 IPR001680 GO:0005515
Dere05g1948 1004 Gene3D - 315 507 IPR015943 GO:0005515
Dere05g1948 1004 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 374 977 IPR011047 -
Dere05g1948 1004 PANTHER TOPLESS-RELATED PROTEIN 1-RELATED 540 977 IPR027728 GO:0006355
Dere05g1948 1004 ProSiteProfiles LIS1 homology (LisH) motif profile. 82 114 IPR006594 GO:0005515
Dere05g1948 1004 ProSiteProfiles C-terminal to LisH (CTLH) motif profile. 112 170 IPR006595 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g1948 Dere-ChrDere05 29424104 29432191 Wgd