Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g1945 ATGGGGAAGCCTACCGGTAAGAAGAAGGATCCTGTAACCCCGAAGTCTGCAAATGCCAACGACAAGCCGAGCAAGCCTTCTGAGAGGAATTCCAAAGCTTTTGACGAAGACACGGCAATCTTCATCAACATGTCACAAGATCTCAAGGAAGAAGGTAATAGACTCTTTCAAAAGAGGGACTACGAAGGTGCTATGTTAAAGTATGAAAAGGCCCTCAAGCTCCTTCCCAGGAACCACATAGATGTGGCACACTTGCATACCAATATGGCTGCGTGTTATATGCAACTGGGTCTTGGAGAGTACCCTCGAGCAATCAACGAATGTAACTTAGCACTAGAAGTATCACCCAGATACAGTAAGGCCCTTTTAAGAAGAGCAAAGTGCTATGAAGCATTGAATCGGTTCGATTTGGCACTGAGAGATGTTAATTTTGTGTTGAGTGTGGAGCCTAATAATCTTAATGCATTGGAGATTCACGAGAGTTTAAAAAAGACCATGGAAGAAAAAGGGATCACTATTGATGAGAAAGAGATTGGTTTGGCTAGCGTAGAGCAGCCTCCTGCTGCTCCTATGCGTAAAATGGTTAGAGAAAAAATAAAGAAAAAGAAAAGTAAAAAAATTGTGGACAAGGCAGAGGATAAGGTGGTTCTTGAGGAGGATGTGAGTTCTATTAAAGATAAAGAAGTGGTGGCAAAAACAATTGAGAAAGAAAAAGTGGTTGTGGAACCTGTTAACGAAGAAAAAGTGGTCACTAGGACGGTCAAGTTGGTATTTGGAGAGGATATAAGGTGGGCACAGTTGCCTGTGAATTGCAGTATGAGGTTGGTAAGGGATATAATTAAGGATCGATTTCCAGGCTTGAAGGGCATTATTGTTAAATATAGGGATCAAGAAGGTGATTTGGTTACTATCACTACTACCAATGAACTAAGATTAGCTGAATCTTCAGGTGATGTGTTGGGTTCTCTTCGACTCTATATTACGGAGGTCAGTCCAGACCAGGAACCAATGTATGATGGAATAACCAATGGGGATGAGATGCAAAGTGATGGTATTGAGATTGGGACTATGGAAGAAGGCAAAGATTTAGCAAATAAGATGACTAGTGTGGAGGATTGGCTAATCCAGTTTGCAAGGCTGTTCAAGAACCATGTTGGGGTTGATTCTGATTCATATTTGGATATTCATGAGCTGGGAATGAAGCTGTATTCGGAAGCACTGGAGGATGTAGTAACAAGTGATGATGCTCAAGAACTTTTCGAAATTGCTGCAGATAAATTTCAGGAGATGGCTGCTTTGGCATTATTTAATTGGGGGAATATTCACATGTCCAGGGCAAGGAAGCGGGTTTCCTTTTCAGAGGATGGGTCAAGGGAATCTGCTTGTGAGCATATCAAAGCTGCATATGAGTGGGCACGGAAGGAGTACATGAAAGCAGAAATGAGATATGAGGAAGCCTTGAAAATCAAACCAGACTTCTATGAAGGATTTCTAGCTCTTGGGCATCAGCAGTTTGAGCAGGCAAAGCTCTGTTGGTATTATGCAATGGCATGCAAGATGAATTTAGAAGATGGCCCTTCTAGTGAGGTTCTACAGCTCTATAACAAGGCAGAGGACAGCATGGAGAGAGGCATGTTGATGTGGGAGGAGATCGAGGAGCGGCGTTTAAATGGTCTATCCAAATTGGATAAATATAAACCACACTTGGGGAAAATGGGTTTAGATAGTCTTGTCAAAGATATTTCTTCTGATGAAGCTGCAGAGCAGGCTGCAAACATGAGGTCACAAATATATATTTTATGGGGCACCTTATTGTATGAGCGTTCTGTTGTGGAATATAAGATAGGCTTACCGACATGGGAGGAATGTTTGGAGGTCGCAGTTGAAAAGTTTGAACTTGCTGGAGCCTCTCCAACAGATATAGGTGTTATGATAAAGAACCATTGTTCCAATCAAACAGCACAAGAAGGTTTGGGGTTCAAAATTGATGAGATTGTACAGGCGTGGAACGAGATGTATGATGCCCAGAGGTGGCTGTTTGGTGTTCCATCATTTCGACTTGAACCATTGTTTCGTCGGCGTGTACCAAAACTTCATTACATCTTGGAGCAATTTTAA 2118 0.4207 MGKPTGKKKDPVTPKSANANDKPSKPSERNSKAFDEDTAIFINMSQDLKEEGNRLFQKRDYEGAMLKYEKALKLLPRNHIDVAHLHTNMAACYMQLGLGEYPRAINECNLALEVSPRYSKALLRRAKCYEALNRFDLALRDVNFVLSVEPNNLNALEIHESLKKTMEEKGITIDEKEIGLASVEQPPAAPMRKMVREKIKKKKSKKIVDKAEDKVVLEEDVSSIKDKEVVAKTIEKEKVVVEPVNEEKVVTRTVKLVFGEDIRWAQLPVNCSMRLVRDIIKDRFPGLKGIIVKYRDQEGDLVTITTTNELRLAESSGDVLGSLRLYITEVSPDQEPMYDGITNGDEMQSDGIEIGTMEEGKDLANKMTSVEDWLIQFARLFKNHVGVDSDSYLDIHELGMKLYSEALEDVVTSDDAQELFEIAADKFQEMAALALFNWGNIHMSRARKRVSFSEDGSRESACEHIKAAYEWARKEYMKAEMRYEEALKIKPDFYEGFLALGHQQFEQAKLCWYYAMACKMNLEDGPSSEVLQLYNKAEDSMERGMLMWEEIEERRLNGLSKLDKYKPHLGKMGLDSLVKDISSDEAAEQAANMRSQIYILWGTLLYERSVVEYKIGLPTWEECLEVAVEKFELAGASPTDIGVMIKNHCSNQTAQEGLGFKIDEIVQAWNEMYDAQRWLFGVPSFRLEPLFRRRVPKLHYILEQF 705
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g1945 705 SUPERFAMILY TPR-like 428 542 IPR011990 GO:0005515
Dere05g1945 705 SMART PB1_new 251 330 IPR000270 GO:0005515
Dere05g1945 705 PANTHER PROTEIN CLMP1 1 703 IPR044517 -
Dere05g1945 705 SMART tpr_5 83 118 IPR019734 GO:0005515
Dere05g1945 705 SMART tpr_5 119 152 IPR019734 GO:0005515
Dere05g1945 705 SMART tpr_5 460 493 IPR019734 GO:0005515
Dere05g1945 705 SMART tpr_5 45 78 IPR019734 GO:0005515
Dere05g1945 705 ProSiteProfiles TPR repeat profile. 119 152 IPR019734 GO:0005515
Dere05g1945 705 SUPERFAMILY CAD & PB1 domains 250 339 - -
Dere05g1945 705 SUPERFAMILY TPR-like 34 158 IPR011990 GO:0005515
Dere05g1945 705 Pfam PB1 domain 251 328 IPR000270 GO:0005515
Dere05g1945 705 ProSiteProfiles PB1 domain profile. 251 330 IPR000270 GO:0005515
Dere05g1945 705 MobiDBLite consensus disorder prediction 1 33 - -
Dere05g1945 705 Gene3D Tetratricopeptide repeat domain 43 172 IPR011990 GO:0005515
Dere05g1945 705 CDD PB1 253 327 - -
Dere05g1945 705 ProSiteProfiles TPR repeat profile. 45 78 IPR019734 GO:0005515
Dere05g1945 705 Gene3D - 237 330 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g1945 Dere-ChrDere05 29413238 29415444 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g1945 28 168 Calmodulin-binding Proteins AT3G25230 32.680 2.33e-10 61.6