Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g1936 ATGGCGTACCACAACCATCATCTCTCCCAAGACCTCCCGCTCCACCATTTCACAGAGCAATCTCAGCAGCAGCAGCAGCAACAACAGAACCAGGCTTTGACTGACAACTCCTTGCGAACGGTATTGCCGAACCCAACCACTAAGCCCGGCTCCGATCCCCACCACCACCACCCGCTTCAAACCGCACCCAATTGGCTCAACAACGCTCTCCTGCGAACCCACTACGCCGACAACAATAACGGCAACAACAATAACAGCACCGCTCCCAACAATACCAACGCCACCAATTTCCTCAACCTCCACACCGCCGCCTCCGACTCCACCGGAGCTGCTTCTCAATCCTCTAGCCAATGGCTGGTACGCCCGATCCTCCACCGGAATCACAGCGACGTCATTGACGATGTCACTGCCGGGGACTCTATCATCGCCGGAGCGACTTTGTCCCATGAATCCGCCGATTTGAAGGTCACCGGCGACAACCTTCACAGCAAGAACGAGGCGGTGGTGGTGGACAGCGGCGGCACCACCGGGGACGGCTTGATGAACTGGCAGAATGCTAGGTTCAAGGCGGAGATTCTTGCCCATCCGCTGTATGAGCAGCTGCTATCAGCACACGTGGCGTGCCTGCGAATCGCCACTCCGGTTGATCAGTTGCCGAGGATCGACGCTCAGCTGGCTCAGTCGCAGAATGTGGTCGCCAAGTACTCGGCGTTGGGACATGGGAGTCAGAGCATGGTTGGGGACGATAAGGAACTCGATCAGTTCATGTCGCACTATGTTTTGTTGCTCTGTTCATTCAAAGAACAACTCCAACAGCATGTTCGGGTCCATGCAATGGAAGCAGTAATGGCTTGTTGGGAGATAGAGCAATCGTTACAAAGTCTAACAGGAGTTTCCCCAGGAGAAGGTACTGGGGCAACAATGTCTGATGACGAGGATGATCAAGTAGACAGTGATACCAACTTATTTGATGGTAGTTTGGATGGTTCAGACATGGGATTTGGCCCTCTTATTCCAACTGAGAATGAGAGGTCCCTCATGGAGCGTGTAAGGCAAGAATTAAAGCATGAACTCAAACAGGGCTACAAGGAGAAAATTGTGGATATAAGAGAGGAAATTTTGCGCAAGAGACGAGCGGGGAAACTTCCTGGTGACACAACCTCTGTCCTTAAAGCTTGGTGGCAATCACATTCCAAGTGGCCTTACCCTACGGAGGAAGACAAGGCAAGGTTGGTTCAGGAGACTGGTTTGCAATTGAAGCAGATTAATAATTGGTTCATCAACCAAAGGAAGAGAAACTGGAACAGCAATCCCTCAACCTCTACGGTTTTGAAAAGCAAGCGCAAAAGGTGA 1353 0.5196 MAYHNHHLSQDLPLHHFTEQSQQQQQQQQNQALTDNSLRTVLPNPTTKPGSDPHHHHPLQTAPNWLNNALLRTHYADNNNGNNNNSTAPNNTNATNFLNLHTAASDSTGAASQSSSQWLVRPILHRNHSDVIDDVTAGDSIIAGATLSHESADLKVTGDNLHSKNEAVVVDSGGTTGDGLMNWQNARFKAEILAHPLYEQLLSAHVACLRIATPVDQLPRIDAQLAQSQNVVAKYSALGHGSQSMVGDDKELDQFMSHYVLLLCSFKEQLQQHVRVHAMEAVMACWEIEQSLQSLTGVSPGEGTGATMSDDEDDQVDSDTNLFDGSLDGSDMGFGPLIPTENERSLMERVRQELKHELKQGYKEKIVDIREEILRKRRAGKLPGDTTSVLKAWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWNSNPSTSTVLKSKRKR 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g1936 450 Pfam KNOX1 domain 189 229 IPR005540 GO:0003677|GO:0005634
Dere05g1936 450 SMART HOX_1 375 440 IPR001356 GO:0003677
Dere05g1936 450 MobiDBLite consensus disorder prediction 296 316 - -
Dere05g1936 450 SMART KNOX2_2 242 297 IPR005541 GO:0003677|GO:0005634
Dere05g1936 450 MobiDBLite consensus disorder prediction 18 47 - -
Dere05g1936 450 ProSiteProfiles 'Homeobox' domain profile. 373 436 IPR001356 GO:0003677
Dere05g1936 450 SMART KNOX1_2 186 230 IPR005540 GO:0003677|GO:0005634
Dere05g1936 450 Pfam Homeobox KN domain 393 432 IPR008422 GO:0003677|GO:0006355
Dere05g1936 450 Gene3D - 372 444 - -
Dere05g1936 450 CDD homeodomain 376 437 IPR001356 GO:0003677
Dere05g1936 450 SUPERFAMILY Homeodomain-like 375 438 IPR009057 -
Dere05g1936 450 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 30 437 - -
Dere05g1936 450 MobiDBLite consensus disorder prediction 18 61 - -
Dere05g1936 450 SMART ELK_2 353 374 IPR005539 GO:0003677
Dere05g1936 450 MobiDBLite consensus disorder prediction 75 94 - -
Dere05g1936 450 Pfam KNOX2 domain 246 296 IPR005541 GO:0003677|GO:0005634
Dere05g1936 450 ProSiteProfiles ELK domain profile. 353 373 IPR005539 GO:0003677
Dere05g1936 450 FunFam homeobox protein knotted-1-like 3 isoform X1 374 435 - -
Dere05g1936 450 Pfam ELK domain 353 374 IPR005539 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g1936 Dere-ChrDere05 29348451 29351907 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g1936 1 450 Homeobox Transcription Factor Family AT5G25220 66.170 0.0 561
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Dere05g1936 KNOX2 1.3e-21 No_clan