LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dere05g1932	ATGAGCGAGAACGAACGCACGATCCCTCCGTACGACGAAGCTTCAGGGAACGACGTGGCAGAAACTATGAAAACGAAGCTTCTTCCTGTGCTTCCTTTTCTGCTTCTTATTCTTCTTGGTGAACCCATTTGGGTTCATGCCGCGACAGACCCTATCGTACCTGTTCCTGTTTCCTCTCCTACACTCCCACTTCCAACCATTTCTCCAATTTCTGCTTCAATGGCTGCTTTCTCCCCAGGTGTTCAGGTGGGGAATGAGCACCAGATGGATTCACACAAGAAAATGGTAATAGCGCTCGCCGCTGCAAGTACAGCACTCGGTGTTGTCATTTTGTGCTTCTTATGCTTCTGGATTTATAAGAAGTATCCCTCCAAATCCAAAAGGACAAACGTTCCGAAGTCAGATGCTGAGAAAGGGCTGGCGCTAACTCCATTTTTGAGTAAATTCACTTCTATCAAGATAATTGGGAAAAAGGGGTCTCTTCCAATCATTGATTATAAGGAAATAGAAAAATCGACGAACAATTTCCGGGAAAGTAACATCTTGGGGCAGGGTGGATTTGGATGTGTTTATAAGGCCCGATTGGATGATAATTTGGATGTAGCCGTCAAGAAACTACACTGTGAAACTCAGAATGCTGAAAGAGAATTCGAGAACGAGGTGAATTTGCTGAGTGAAATTCAGCATCCAAATATAATTTCTATATTGGGTTGTAGCATTAACGACGACACGAGATTTATTGTCTATGAGTTGATGCAAAATGGATCCCTGGAAACTCAATTACATGGACCTTCCCATGGTTCAGCATTGAGCTGGCATATGAGAATGAAAATTGCTCTTGATACGGCTAGAGGATTGGAATATCTGCATGAGCACCGTAGACCTCCGGTGATCCATAGAGATCTGAAATCATCTAATATTCTTTTAGATGGAAACTTCAATGCTAAGCTTTCTGATTTTGGTCTGGCCATAATGGATGGGTCCCAAAGCAAGAATAACATAAAGCTATCAGGCACCTTGGGATACGTAGCCCCGGAGTATCTTCTAGATGGTAAATTGACTGATAAAAGTGATGTTTATGCTTTTGGAGTTGTGCTTCTGGAGCTCCTGTTGGGAAGAAAGCCTGTGGAAAAACTAGCACCAGCTCAGTGCCAATCGATTGTCACATGGGCCATGCCACAGCTTACCGACAGATCAAAGCTTCCTAACATTGTGGATCCTGTGATCAAGAACGCAATGGATCCCAAGCATTTATACCAGGTGGCTGCTGTAGCTGTGCTATGCGTGCAACCAGAACCAAGTTACCGTCCGCTGATAACAGATGTTCTGCACTCCCTCATTCCTCTTGTTCCTGTTGAGCTTGGAGGAACGCTCAGAGTCTCACAAGTGACACACAATGTTGTGCAGTAA	1410	0.4426	MSENERTIPPYDEASGNDVAETMKTKLLPVLPFLLLILLGEPIWVHAATDPIVPVPVSSPTLPLPTISPISASMAAFSPGVQVGNEHQMDSHKKMVIALAAASTALGVVILCFLCFWIYKKYPSKSKRTNVPKSDAEKGLALTPFLSKFTSIKIIGKKGSLPIIDYKEIEKSTNNFRESNILGQGGFGCVYKARLDDNLDVAVKKLHCETQNAEREFENEVNLLSEIQHPNIISILGCSINDDTRFIVYELMQNGSLETQLHGPSHGSALSWHMRMKIALDTARGLEYLHEHRRPPVIHRDLKSSNILLDGNFNAKLSDFGLAIMDGSQSKNNIKLSGTLGYVAPEYLLDGKLTDKSDVYAFGVVLLELLLGRKPVEKLAPAQCQSIVTWAMPQLTDRSKLPNIVDPVIKNAMDPKHLYQVAAVAVLCVQPEPSYRPLITDVLHSLIPLVPVELGGTLRVSQVTHNVVQ	469

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dere05g1932	469	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	297	309	IPR008271	GO:0004672\|GO:0006468
	Dere05g1932	469	SMART	serkin_6	176	447	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Dere05g1932	469	ProSiteProfiles	Protein kinase domain profile.	176	447	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Dere05g1932	469	FunFam	Protein kinase superfamily protein	143	251	-	-
	Dere05g1932	469	CDD	STKc_IRAK	182	449	-	-
	Dere05g1932	469	Gene3D	Phosphorylase Kinase; domain 1	145	251	-	-
	Dere05g1932	469	ProSitePatterns	Protein kinases ATP-binding region signature.	182	205	IPR017441	GO:0005524
	Dere05g1932	469	SUPERFAMILY	Protein kinase-like (PK-like)	157	446	IPR011009	-
	Dere05g1932	469	Pfam	Protein kinase domain	177	444	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Dere05g1932	469	PANTHER	OS01G0750732 PROTEIN	59	449	-	-
	Dere05g1932	469	FunFam	probable receptor-like protein kinase At1g80640	252	451	-	-
	Dere05g1932	469	Gene3D	Transferase(Phosphotransferase) domain 1	252	451	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dere05g1932	Dere-ChrDere05	29303800	29310309	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dere05g1932	42	392	Receptor kinase-like Gene Family	AT1G80640	47.425	7.91e-101	304

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_RLCK-X	Dere05g1932		Pkinase	5.8e-49	CL0016