Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g1926 ATGACCGTAGAGACTAGAACGGATGAACCCAGAGGCCAGTTTCCTGTAGGAATGCGTGTGCTTGCTGTTGACGATGACCCAACTTGCCTCTTGGTGTTGGAAACTCTGCTTCGGAGATGCCAATATCACGGTGTGCATCTTATGCTTTTGATGTCTTCTTCCATATGCTATGTTTCCTTTTCTGTGAGATTGAAGATTTGGGTTGTCGATATGTGCTTTGGTCTTTTAGCCTATCAGGTGTACTTTCCCTCGGGCCCTCCTTCCTCCCGTTCTTCAATTCTCATTTCTCGTGTATTAACGACGACTAATCAGGCAATAACAGCTTTGAAGATGTTAAGAGAGAACAAAAACAAGTTTGACCTGGTTATTAGTGATGTTCATATGCCAGACATGGATGGATTTAAGCTGCTTGAGCTTGTTGGTCTTGAGATGGACCTACCTGTCATAATGTTGTCTGCGAATGGTGACACAAAGCTGGTGATGAAGGGGATTACTCATGGTGCTTGTGACTATCTTCTGAAGCCTGTTCGAATTGAGGAGCTAAAGAACATTTGGCAGCATGTTATAAGGAGGAAGAAGTTTGACTCAAAGGAGAAAAACAACACCTGCAACCAAGATAAGCCTCATTCTGGTACCAACAACGGATTAGCTTCAGCAGGAGCTGGAAATTCTGATCAAAATGGAAAGCTTACCAAAAAAAGGAAGGATCAGGATGATGAAGATGATGATGAGCATGAGCATGGTCATGACAATGACGACCCTTCAACCCAAAAGAAGCCTCGTGTTGTTTGGTCAGTTGAGCTGCACCGAAAGTTTGTTGCTGCTGTTAATCAATTAGGCATTGACAAGGCTGTGCCTAAAAAAATTCTGGATTTGATGAATGTTGACAAGCTCACAAGGGAAAATAAATATAGGCTATATCTGAAAAGAATTAGCTGTGTGGCAAATCAGCAGGCTAATATGGTGGCAGCCTTAGGAAGTGCAGATCCATCTTATCTGAGAGTGGGATCTCTGGGTGGGATTAAGCATCTTCAACCATTGAGTGGGTCTGGACAGTTTCAGAACAATGTTTTCCGATCCCTTCCATATAGTGGGATGATTGGAAGATTGAACACTCCTGCTGGGCTTGGTGTTCATGGGTTGCCTTCATCTGGAATTCTTCAGTTGGGTCATACCCAGAATTTGAACAACTCCACGAATGATCCTCCTAAGTTCCAGCCATCCATAGCTCATGTAAATCAGAATGGCAGTTCACTTCAGGGCATGCCAGTATCTGTAGGGCTTGATCAATCACAACCCAGTAAGGTTATTAGTTCTGTTCAAGGTCCTACCACTGGTTTTGATGATAAAACCATATCTCTCATCTCAAATAAATTGCCAGATCCAAGAGCAAGAGTAAGCTCTAGTTGCTCAAGAACTCCAGTTGTTGGTGTCACAAACAATGGCTTGATGTTAGAACCAAATTCTCAAGACACACAAAGGAGAAGAGGATATGAGAATCTTGCTTCAGTAGCCTCACAACATTCAGAATTTTCTTTGCCTTTATTGGATAATCAGAATGGTAGGTGTAGTGATAATTGGCCAAGTGCTGTGCAGTCATCTGGGATGCACACAAATTCTTACTCAACAAATGAATGTTTTCATATTGGGAATCCAAGTGGTGCTTCATCCATCACTTCACTGTCCATTCAATCCCATGAGCCAATGACAGATATGCACTCCCATGCCATTTTTACTAACAATACACCGAATGTGGCATATCAAGGGTGGGATGAGCATTCGTTAGACTCTCTGATTCCTGTAAATGGTGCAGTTGGTCCCATAGGCTTCCACAGGAACTTGGACTATAATTATGGAAACCCCTTAGAAATGAAGCATGAGGGGGTCCCAAAATCAGCCGAAGATACCTCTTTGAGATCCAATCAAGCATATATCGTGGACCCCCAGAAGGCACAGCGGAATCGCATCTCTAATAATCTTGGTTCATTGGAAGACTTAGTCAGTGCAATGATGAAACAGGAACAAGATAAGGTGAAATTGGTGGATGGAGACTTCGTATGTGATGATTTCACGGGTGGAACATCTATGTGA 2091 0.4285 MTVETRTDEPRGQFPVGMRVLAVDDDPTCLLVLETLLRRCQYHGVHLMLLMSSSICYVSFSVRLKIWVVDMCFGLLAYQVYFPSGPPSSRSSILISRVLTTTNQAITALKMLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDLPVIMLSANGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRRKKFDSKEKNNTCNQDKPHSGTNNGLASAGAGNSDQNGKLTKKRKDQDDEDDDEHEHGHDNDDPSTQKKPRVVWSVELHRKFVAAVNQLGIDKAVPKKILDLMNVDKLTRENKYRLYLKRISCVANQQANMVAALGSADPSYLRVGSLGGIKHLQPLSGSGQFQNNVFRSLPYSGMIGRLNTPAGLGVHGLPSSGILQLGHTQNLNNSTNDPPKFQPSIAHVNQNGSSLQGMPVSVGLDQSQPSKVISSVQGPTTGFDDKTISLISNKLPDPRARVSSSCSRTPVVGVTNNGLMLEPNSQDTQRRRGYENLASVASQHSEFSLPLLDNQNGRCSDNWPSAVQSSGMHTNSYSTNECFHIGNPSGASSITSLSIQSHEPMTDMHSHAIFTNNTPNVAYQGWDEHSLDSLIPVNGAVGPIGFHRNLDYNYGNPLEMKHEGVPKSAEDTSLRSNQAYIVDPQKAQRNRISNNLGSLEDLVSAMMKQEQDKVKLVDGDFVCDDFTGGTSM 696
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g1926 696 PANTHER TWO-COMPONENT RESPONSE REGULATOR 18 420 IPR045279 GO:0009736
Dere05g1926 696 SUPERFAMILY CheY-like 99 194 IPR011006 -
Dere05g1926 696 SMART REC_2 64 185 IPR001789 GO:0000160
Dere05g1926 696 CDD REC_typeB_ARR-like 20 189 - -
Dere05g1926 696 MobiDBLite consensus disorder prediction 195 259 - -
Dere05g1926 696 SUPERFAMILY Homeodomain-like 256 310 IPR009057 -
Dere05g1926 696 FunFam Two-component response regulator 255 312 - -
Dere05g1926 696 Gene3D - 17 210 - -
Dere05g1926 696 NCBIfam myb-like DNA-binding domain, SHAQKYF class 259 302 IPR006447 GO:0003677
Dere05g1926 696 MobiDBLite consensus disorder prediction 205 227 - -
Dere05g1926 696 Pfam Response regulator receiver domain 101 183 IPR001789 GO:0000160
Dere05g1926 696 MobiDBLite consensus disorder prediction 228 257 - -
Dere05g1926 696 Gene3D - 255 312 - -
Dere05g1926 696 ProSiteProfiles Response regulatory domain profile. 19 189 IPR001789 GO:0000160
Dere05g1926 696 PIRSF RR_ARR_type-B 97 695 IPR017053 GO:0003677|GO:0003700|GO:0009736
Dere05g1926 696 PIRSF RR_ARR_type-B 1 48 IPR017053 GO:0003677|GO:0003700|GO:0009736
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g1926 Dere-ChrDere05 29258918 29262110 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g1926 1 691 Response Regulator Gene Family AT2G25180 38.579 3.51e-108 338
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Dere05g1926 Response_reg 1.6e-16 CL0304
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere05g1926 05 29258918 29262110 Dere04g0510 04 5181494 5185357 CCT