Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g1925 ATGGTTTTGAATCCGTATTTTTGCTCCACCGCTTTCCTTTATTTTTCTCTTTTCCCAACTCCAGTGCCAGTTTCCCGCGAATTTCCAAAGCCTTGGTCGCCAGATCCGGTGATTAGTGACCACCCTTTGGTTGAGGAGGTCTACATTGTGATCCTTGCTAAAGGTGATGTAATCCCATTCCCCAGTCTCAACTTGAACTACCACACTGTTAGCTTTGCTTATCGAGGGACCAAAAATGAAAAAGGAAATAAATTTGGGATTAGTGTTGTCAATGGTGGCTACTGTGGTGGAATAGCATCACAGTTTAGGGGTATAAAACCCCTGAGGTTTATTATTAGTGTTGAGATGAACATGAGTAGCTTGGTTGAGAGGCTTCGTGTAAGATCAGATCGCAAGCCAGTTTATAATATTGATGAGTCAGATGATGATGCTGACTTTTTACCTGGGAAACCTGGCAGAACTGAGGAAAAGTTTGAGAGGATAGTTAGAAGTGATGCAAAAGAGAATTCATGCCAAGCCTGTGGAGAAAGTGAAGATCTTCTTAGCTGTGAAACATGTAATTACGCTTTCCATCCTAAGTGTTTACTTCGGCCTCTTAAAGCTCCGCTTCCAGATAATTGGAGGTGCCCTGAATGTGTTAGCCCATTAAATGATATTGAAAAGATATTAGATTGTGAAATGCGCCCTACTGTGGCGTGTGATGGCGATGCCACAAAAGTGGGCTCAAAACAAATTGTTGTCAAACAATATCTTGTCAAGTGGAAAGGACTATCATATCTGCACTGCACGTGGGTTTCAGAGAAAGAGTTTCTGAAAGCTTTCAAGTCACATCCTCGTCTGAAGACCAAAGTAAACAACTTCCACCGTCAAATGGCATCTGCCAATACTTCTGAGGAAGATTTTGTTGCCATTCGACCTGAATGGACCATGGTTGATCGTATAATTGCTTGCAGGGGTCACGATGATGAGAAGGAATATCTCGTGAAATGGAAAGAGCTTTCATATGATGAATGCTATTGGGAGTCTGAGTCTGATATATCTGCATTTCAGCCAGAAATAGAAAGATTTACAAAATATCAGTCTAGGTCTAGGAGAGTTTCTTCTAGTAAGCAGAAAAATAGTGTTAAGGGTGGTGCTGAAGCAAACAAGCCTCAGAAAGAATTTCAACAGTATGAAGATAGCCCTGGCTTTCTTTCAGGCGGCACCCTACATCCGTATCAGCTTGAAGGCTTGAACTTCCTACGTTTCTCTTGGTCTAAGCAAACTCATGTTATACTTGCTGATGAAATGGGACTTGGAAAAACCATACAAAGTATTGCTTTTTTAGCATCTCTTTTTAAAGAGAATGTTTTTCCACATCTTGTGGTTGCTCCACTGTCAACACTCCGAAACTGGGAACGTGAATTTGCAACATGGGCACCTCAAATGAATGTTGTTATGTATGTTGGATCAGCCCAAGCTCGTGCTGTTATAAGAGAGTATGAATTTTACTTTCCAAGGAAACAGAAGAAGATCAAGAAAAAAAAATCTGGTAAAGTGGTTAGTGAAAGCAAACAAGATAGGATCAAGTTTGATGTCCTTCTGACATCATATGAGATGATCAACTTGGACACAGCATCGTTGAAACCTATAAATTGGGAGTGCATGATAGTTGATGAAGGTCACCGGCTCAAAAATAAGGATTCAAAATTATTTTCTTCATTGAAGCAATATTCTAGCAGACATCGTGTACTTTTGACTGGGACTCCTTTGCAGAACAATTTGGATGAACTTTTTATGCTAATGCACTTCCTTGATGCTGGGAAGTTTGGAAGCTTAGAGGAGTTCCAGGAAGAGTTTAAGGATATTAATCAAGAGGAACAGATATCAAGGCTTCACAGAATGTTGGCTCCACACCTCCTTAGAAGAGTGAAGAAAGATGTGATGAAGGAATTACCTCCTAAAAAGGAACTTATTCTTCGAGTTGAGCTAAGCAGCAAACAGAAAGAATATTATAAGGCAATTTTGACCCGCAACTATCAAATACTAACTCGTCGTGGTGGTGCACAGATTTCTCTTATCAATGTTGTGATGGAATTGCGCAAACTATGTTGTCATCCTTACATGTTAGAAGGAGTTGAACCAGATATTGAAGATGCGAAAGAATCATACAAACAGCTGCTGGAATCATCAGGGAAGTTGCAATTGTTGGACAAGATGATGGTGAAGCTTAAAGAGCAAGGACACAGAGTCCTCATATATTCACAATTTCAGCACATGTTGGACTTACTAGAAGATTACTGTTCTTACAAGAATTGGCAGTATGAAAGGATAGATGGTAAGGTTGCTGGAGCTGAAAGACAAGTAAGGATAGATCGGTTTAATGCCAAAAATTCGTCAAGATTTTGCTTTCTTCTTTCTACCAGAGCTGGTGGACTGGGAATAAACCTTGCAACTGCTGACACTGTTATTATATATGACAGTGATTGGAATCCTCATGCTGATCTACAAGCTATGGCTAGAGCTCATCGACTTGGACAAACTAATAAGGTGTTGATTTACAGGCTTATAACACGAGGAACCATTGAAGAAAGGATGATGCAAATGACTAAGAAGAAAATGGTGTTAGAACATTTAGTTGTTGGGAGGCTAAAGGCTCAAAACATCAACCAGGAAGAGTTGGATGATATAATTAGATATGGCTCAAAGGAGTTATTTGCTGATGAGAATGATGAAGCAGGCAAATCCCGCCAAATTCATTATGATGATGCTTCCATTGATAGATTGCTGGATCGTGAGCAAGTTGGAGATGAAGATGCTATGTTGGATGATGAAGATGATGATGGATTTCTGAAAGCCTTTAAGGTGGCAAATTTTGAATATATTGACAAAGTTGAGGCTGCAGCAGAGGAGGAGGCAAGGAAAAAAGAAATGGAAAATAAAGATACTGTAAACAGTTCAGATAGAACAAATTACTGGGAGGAGTTGCTGAGAGACCGATATGAAGTGCATAAAATTGAAGAGTTAAGTACCTTGGGCAAAGGCAAGCGGAACCGCAAGCTGATGGCTTCTGTTGAGGAGGATGATCTTGCTGGTCTGGAAGATGTAAGCTCTGATGGTGAAGATGACAATTATGAAGCAGATCTTACTGATGGCGATTCAAATTCAACTGGAACTACTTCTAGTAGAAGACCTTACAAAAAGAAAGCCCGTGCAGCAGATAGCACAGAGCCACTTCCTCTGATGGAAGGTGAAGGAAAATCATTTAGAGTACTTGGCTTCAACCAAAGCCAGAGGGCTCAATTTGTGCAAATTTTGATGAGGTTTGGGGTTGGTGATTATGATTGGAAGGAGTTTACTCCCCGCCTGAAACAGAAGACATATGAAGAAATCAAAGATTACGGAATGCTTTTCTTGTCTCATATTGCTGAAGATATAACTGATTCCACAACATTCTCAGATGGTGTTCCAAAAGAAGGACTTAGAATACAAGATGTACTTGTTAGGATTGCAGTTCTTCTCATGATAAGGGACAAAGTGAAGTTTGCATCAGAAAACCCCAGAACTCCGCTTTACTCAGAGGATATCTTATTACGTTATCCAGGTTTGAAGGGTGGAAAGATATGGAAGGAGGAGCAGGATAGAGTGTTACTGCGTGCCGTGCTGAAGCATGGGTATGGAAGGTGGCAAGCTATTGTGGATGATAAGGATCTAAAGATTCAGGAGGTCATCTGTCAGGAGTTGAATCTTCCCATTATAAATTTACCGGTACCAGGACAAGTTGGTAGCCAGGTGCAAAATGGTGCAAATTCAATAAATGTAGAAGCAACTCGCAGCCAATCTGGGGAAAATGGTGGGAGTGATATGGCAGCTGATGGTGTACATGTTTCTGGAGATGCTAGGAACCAAGCACAGTTATATCAAGAGTCTTCCATCTTATATCATTTTAGAGACATGCAGAGAAGACAGGTTGAGTTTGTGAAAAAGAGGGTGCTTCTGTTGGAAAAGGGACTCTATGCTGAGTGCCAGAAAGAATACTATGGTGACCATAATACAAATGAAGCCATGAATGCAGAATTTAAGAGTGAACCAAATGTAATGAATGTGCCTAGTTATAAATCAACGGAAGATGAGAAGCAGATGATTGATCAACTGCCTCAAGTGGAAGAAATAGGTTCAGAAGAAATTTCTGTTGCTGCTTGTGATAATGATACAAATCGATCGGAATTGGTTCGACTCTACAATGTGATGTGCAGGGTTGTGGAGGAAAACCCCATGGAAATGGCTAGAGGAGCAGCAGAAGGCGGCTTGAAGAACTTGCTTCCCCTAGAAACTATTTGTGAAGACATCAATAAAATCTTGTCACCCGCAAGGCAAGATCATCGCACTGCAGAAACGCCAATACCAAATCCAGACAACAACTCAGTGGCTTTATCAGAGAATGCAGTTATGGGCTCCAGATTGCGGCCTGTCCTTCAAGATGATTGCAAACCTGATAATCCGGTGATCAATGGGAGCAAAGGCGGGGCGACAGGGTCTGAGCTTGAAAAAGAAAGCAAAGATGAGACGAGGGGAAGTGATGTAGAAATGGGTGAAGCTAGTAATGATGCTGAGTTGGATGAGGACGTGGATAAATCTGACCCGGGGGTTGTTGTATTGGATGATTAA 4647 0.4097 MVLNPYFCSTAFLYFSLFPTPVPVSREFPKPWSPDPVISDHPLVEEVYIVILAKGDVIPFPSLNLNYHTVSFAYRGTKNEKGNKFGISVVNGGYCGGIASQFRGIKPLRFIISVEMNMSSLVERLRVRSDRKPVYNIDESDDDADFLPGKPGRTEEKFERIVRSDAKENSCQACGESEDLLSCETCNYAFHPKCLLRPLKAPLPDNWRCPECVSPLNDIEKILDCEMRPTVACDGDATKVGSKQIVVKQYLVKWKGLSYLHCTWVSEKEFLKAFKSHPRLKTKVNNFHRQMASANTSEEDFVAIRPEWTMVDRIIACRGHDDEKEYLVKWKELSYDECYWESESDISAFQPEIERFTKYQSRSRRVSSSKQKNSVKGGAEANKPQKEFQQYEDSPGFLSGGTLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFKENVFPHLVVAPLSTLRNWEREFATWAPQMNVVMYVGSAQARAVIREYEFYFPRKQKKIKKKKSGKVVSESKQDRIKFDVLLTSYEMINLDTASLKPINWECMIVDEGHRLKNKDSKLFSSLKQYSSRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIEDAKESYKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYCSYKNWQYERIDGKVAGAERQVRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVLIYRLITRGTIEERMMQMTKKKMVLEHLVVGRLKAQNINQEELDDIIRYGSKELFADENDEAGKSRQIHYDDASIDRLLDREQVGDEDAMLDDEDDDGFLKAFKVANFEYIDKVEAAAEEEARKKEMENKDTVNSSDRTNYWEELLRDRYEVHKIEELSTLGKGKRNRKLMASVEEDDLAGLEDVSSDGEDDNYEADLTDGDSNSTGTTSSRRPYKKKARAADSTEPLPLMEGEGKSFRVLGFNQSQRAQFVQILMRFGVGDYDWKEFTPRLKQKTYEEIKDYGMLFLSHIAEDITDSTTFSDGVPKEGLRIQDVLVRIAVLLMIRDKVKFASENPRTPLYSEDILLRYPGLKGGKIWKEEQDRVLLRAVLKHGYGRWQAIVDDKDLKIQEVICQELNLPIINLPVPGQVGSQVQNGANSINVEATRSQSGENGGSDMAADGVHVSGDARNQAQLYQESSILYHFRDMQRRQVEFVKKRVLLLEKGLYAECQKEYYGDHNTNEAMNAEFKSEPNVMNVPSYKSTEDEKQMIDQLPQVEEIGSEEISVAACDNDTNRSELVRLYNVMCRVVEENPMEMARGAAEGGLKNLLPLETICEDINKILSPARQDHRTAETPIPNPDNNSVALSENAVMGSRLRPVLQDDCKPDNPVINGSKGGATGSELEKESKDETRGSDVEMGEASNDAELDEDVDKSDPGVVVLDD 1548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g1925 1548 Gene3D - 395 645 IPR038718 -
Dere05g1925 1548 SUPERFAMILY Chromo domain-like 297 361 IPR016197 -
Dere05g1925 1548 MobiDBLite consensus disorder prediction 364 386 - -
Dere05g1925 1548 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 392 636 IPR027417 -
Dere05g1925 1548 CDD CD2_tandem 307 356 - -
Dere05g1925 1548 CDD CD1_tandem 215 289 - -
Dere05g1925 1548 ProSiteProfiles Rubredoxin-like domain profile. 178 222 IPR024934 GO:0005506
Dere05g1925 1548 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 638 894 IPR027417 -
Dere05g1925 1548 Gene3D - 1157 1298 - -
Dere05g1925 1548 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 415 601 IPR014001 -
Dere05g1925 1548 Gene3D - 646 870 IPR027417 -
Dere05g1925 1548 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 729 890 IPR001650 -
Dere05g1925 1548 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 161 216 IPR013083 -
Dere05g1925 1548 ProSiteProfiles Chromo and chromo shadow domain profile. 217 299 IPR000953 -
Dere05g1925 1548 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 132 1457 - -
Dere05g1925 1548 MobiDBLite consensus disorder prediction 1023 1042 - -
Dere05g1925 1548 Pfam CHD subfamily II, DUF1087 961 1022 IPR009463 -
Dere05g1925 1548 SUPERFAMILY Chromo domain-like 183 294 IPR016197 -
Dere05g1925 1548 Gene3D - 217 292 - -
Dere05g1925 1548 Pfam PHD-finger 171 213 IPR019787 -
Dere05g1925 1548 ProSitePatterns Zinc finger PHD-type signature. 171 212 IPR019786 -
Dere05g1925 1548 SMART PHD_3 170 213 IPR001965 -
Dere05g1925 1548 SMART chromo_7 307 361 IPR000953 -
Dere05g1925 1548 SMART chromo_7 216 285 IPR000953 -
Dere05g1925 1548 SMART helicmild6 755 839 IPR001650 -
Dere05g1925 1548 MobiDBLite consensus disorder prediction 364 378 - -
Dere05g1925 1548 MobiDBLite consensus disorder prediction 1484 1548 - -
Dere05g1925 1548 Gene3D - 295 358 - -
Dere05g1925 1548 SMART DUF1086_2 1030 1190 IPR009462 GO:0003677|GO:0006338
Dere05g1925 1548 SMART ultradead3 399 612 IPR014001 -
Dere05g1925 1548 MobiDBLite consensus disorder prediction 1506 1524 - -
Dere05g1925 1548 Pfam CHD subfamily II, SANT-like domain 1053 1187 IPR009462 GO:0003677|GO:0006338
Dere05g1925 1548 ProSiteProfiles Zinc finger PHD-type profile. 168 215 IPR019787 -
Dere05g1925 1548 Coils Coil 954 975 - -
Dere05g1925 1548 ProSiteProfiles Chromo and chromo shadow domain profile. 309 371 IPR000953 -
Dere05g1925 1548 Pfam SNF2-related domain 423 703 IPR000330 GO:0005524|GO:0140658
Dere05g1925 1548 SMART DUF1087_2 960 1025 IPR009463 -
Dere05g1925 1548 Pfam Chromo (CHRromatin Organisation MOdifier) domain 237 273 IPR023780 -
Dere05g1925 1548 Pfam Chromo (CHRromatin Organisation MOdifier) domain 310 357 IPR023780 -
Dere05g1925 1548 CDD SF2_C_SNF 724 850 - -
Dere05g1925 1548 MobiDBLite consensus disorder prediction 1023 1074 - -
Dere05g1925 1548 Pfam Helicase conserved C-terminal domain 726 839 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g1925 Dere-ChrDere05 29221681 29257178 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g1925 425 900 RAD5 or RAD16-like Gene Family AT1G02670 22.302 1.11e-29 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Dere05g1925 SNF2_N 2.7e-66 CL0023
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere05g1925 05 29221681 29257178 Dere04g0508 04 5152897 5174126 CCT