LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dere05g1914	ATGGAATCAACATGCGTGGACACTTCTCTCAACCTTAACGTTAGTCCTTCTCGGCCCCTGGATGTTGCGGCTGAGGTATTGGTGGAAGAGTTGCATCGTTTGAGCAGTGAGAATAAGAGGCTAACTGAGAAGCTTACTATCATGTCTGAGAGCTACAGTGCTTTACAACAGCACTTGAACGAAGTGCTTAATAAGAAGACGAATTCTCCAACAGACTTAACTAGTACAGAACAATCAAGGAAGAGAAAGGCTGAAACTGGGAATTGTAGAATTAATAATAATATGTTCGGTTTTAGTGGCGCTTACGAGTGCAGCACCATCACTGAGGAAGAGTCATTCAAAAGACCCAAGGATCCCAGTCGCGGTCACACCACTCCTCATAAGGTTTTGAAGGTTCTTGTGCACACGAAGGCATCTGATCCCAGCTTATATGTGAGAGATGGATATCAGTGGAGGAAATATGGTCAGAAGGTCACTAGAGATAACCCCTCTCCTAGGGCTTACTTCAGGTGCTCTTTTGCCCCAAACTGCCCAGTGAAAAAGAAGGTGCAAAAAAGTGTAGAAGACCCAACTGTGTTGGTGGCAACTTACGAAGGAGAGCACAACCATGCTGCGAATGGAGCCGAATTATTACTTAGTCCGACCCAAAGTGAAGTCATTGATTCAGATCCCATGAATACAAGTGCAGGAACGACGATTACGCTTGACCCCAACTCCATGCACCAGATTTTGGTTCAACAAATGGCTTCTTCTTTGAGAAGAGATCCCAATTTCACATCAGCTCTTGCTACCGCCATTTCAGGAAGAATTTTAGACCACACTATTCCAGAATAA	834	0.4448	MESTCVDTSLNLNVSPSRPLDVAAEVLVEELHRLSSENKRLTEKLTIMSESYSALQQHLNEVLNKKTNSPTDLTSTEQSRKRKAETGNCRINNNMFGFSGAYECSTITEEESFKRPKDPSRGHTTPHKVLKVLVHTKASDPSLYVRDGYQWRKYGQKVTRDNPSPRAYFRCSFAPNCPVKKKVQKSVEDPTVLVATYEGEHNHAANGAELLLSPTQSEVIDSDPMNTSAGTTITLDPNSMHQILVQQMASSLRRDPNFTSALATAISGRILDHTIPE	277

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dere05g1914	277	ProSiteProfiles	WRKY domain profile.	147	206	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Dere05g1914	277	FunFam	WRKY transcription factor 40	130	207	-	-
	Dere05g1914	277	PANTHER	WRKY TRANSCRIPTION FACTOR 36-RELATED	24	270	IPR044810	GO:0003700
	Dere05g1914	277	SMART	WRKY_cls	145	205	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Dere05g1914	277	Gene3D	WRKY domain	130	205	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Dere05g1914	277	SUPERFAMILY	WRKY DNA-binding domain	143	204	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Dere05g1914	277	MobiDBLite	consensus disorder prediction	63	86	-	-
	Dere05g1914	277	Coils	Coil	24	44	-	-
	Dere05g1914	277	Pfam	WRKY DNA -binding domain	147	203	IPR003657	GO:0003700\|GO:0006355\|GO:0043565

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dere05g1914	Dere-ChrDere05	29063649	29065244	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dere05g1914	3	270	WRKY Transcription Factor Family	AT1G80840	42.193	5.55e-66	206

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	WRKY	Dere05g1914		WRKY	1.3e-23	CL0274