Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g1913 ATGACGATGAATTGCACTCGAAAGTTGGCGTCTCTGTCTAAATCAGAAACAGATTACTCTATAGATTCTTGTCCTCTGTGTCTGAAGCTCCTTCAACTTCACCCTGCCAAAATGAATGAAAAGGAAGAAACGCTTCAAGAGGAGTTGAACCGTGTGAAAGAGGAGAATAACGCACTAAGAGTGATGCTTGAAGTTCTGTGCAGCAAATACAAAAAGATTCAGTCCCAGCTTCAAGAAATAAGCGTGGATCACTCTAATCAAAGCGGGTCAGCATCTCATTACGATATGAACAAGAGACCAAGAATTGAGTTTCCCGTAGCACATAAGCCCCTACAGATCTTTGCCAGGACCCATCCCCAGGACAATAGTATGATGGTAAGAGATGGCTATCAGTGGAGGAAGTATGGTCAGAAGGTTACCAAAGACAATCCATCGCCTCGAGCTTACTTCAGGTGCTCTATGTCTCCAAACTGCCCAGTCAAAAAGAAGGTACAAAGATGCATACAAGACAGGTCTGTCCTAGTGGCAACTTATGAAGGAGAGCACAATCATGGAGTTCTTGATCCTAGTACTCCCAAAGGCTCAGTTGCTGACGACATAGAAACGACCAACATTAATGAAATTGGTCTTCCTGGTTGGACTCAAACAGATAGAAAACACACTGAAGATTTAAGCAACAACAGTATTGCACAATTTGTGGGTTCTCTGGTCAAAGATCCCAACTTTACAGTATCGTTAGCTGAAGCAGTTGCCCGCTCCATCACTCGCCAACAACGTAACCAACAAGAAGAACTCGACCTTAATTTGAGTCTCGCCGAAGTGTAA 825 0.4352 MTMNCTRKLASLSKSETDYSIDSCPLCLKLLQLHPAKMNEKEETLQEELNRVKEENNALRVMLEVLCSKYKKIQSQLQEISVDHSNQSGSASHYDMNKRPRIEFPVAHKPLQIFARTHPQDNSMMVRDGYQWRKYGQKVTKDNPSPRAYFRCSMSPNCPVKKKVQRCIQDRSVLVATYEGEHNHGVLDPSTPKGSVADDIETTNINEIGLPGWTQTDRKHTEDLSNNSIAQFVGSLVKDPNFTVSLAEAVARSITRQQRNQQEELDLNLSLAEV 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g1913 274 Pfam WRKY DNA -binding domain 128 184 IPR003657 GO:0003700|GO:0006355|GO:0043565
Dere05g1913 274 Gene3D WRKY domain 114 186 IPR036576 GO:0003700|GO:0006355|GO:0043565
Dere05g1913 274 SUPERFAMILY WRKY DNA-binding domain 122 186 IPR036576 GO:0003700|GO:0006355|GO:0043565
Dere05g1913 274 ProSiteProfiles WRKY domain profile. 121 187 IPR003657 GO:0003700|GO:0006355|GO:0043565
Dere05g1913 274 SMART WRKY_cls 126 186 IPR003657 GO:0003700|GO:0006355|GO:0043565
Dere05g1913 274 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 39 89 IPR044810 GO:0003700
Dere05g1913 274 Coils Coil 38 62 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g1913 Dere-ChrDere05 29050123 29051902 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g1913 45 262 WRKY Transcription Factor Family AT1G80840 35.793 1.25e-45 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Dere05g1913 WRKY 1.3e-23 CL0274
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere05g1913 05 29050123 29051902 Dere04g0500 04 5011942 5013327 CCT