Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g1880 ATGAAGAAGCTTGATTACTCTGTGGTCTTGTTGTCTATGTGGACTTTATGTTGTAACCTGGGCATGGCACAGACAAACGAAACTGTGGAGGTGAAGGTGGGGATCGTACTTGATCTTTCGTCTACCACTGCAAAAGTGGGCTTGAGCTGCATCAACATGTCCCTCTCTGACTTCTATCTCTCTCATTCTCATTACAAAACCAGGCTCGTCTTCATCATCAGGGACTCCCGCAGAGACGTCGTTTCTGCAGCTGCTCAAGCTCTAGATCTCATAAAATCAGAAAATGTGCAAGCCATAATAGGGCCATTAACGTCAATGGAGGCCAACTTTGTGATCAGTCTTGGAGACAAAGCTCATGTGCCCATCATAACCTTTTCAGCAACGAGCCCTTCGCTTGCTTCCAGTCCAATTTCATATTTTTTTCGAATTGCTCAAGTTGATTCAGCTCAAGTGAATGCCATTGGGGCCATCGTTCAAGCTTTTGGGTGGAGAGAAGTAGTGCCCATTTACGTAGACAACGATTATGGGAAGGGAGTGATACCCTTCTTAACCAACGCTCTGCAACAAGTGTATGCTCGAATCCCATATCTCAGTGCCATTTCCCCTTCAGCCACTGATGCAGACGTTAGAGGAGAGCTCTACAAGTTGATGACCATGCAAACCAGAGTGTTCGTTGTGCACATGTCTACCAATCCTGGCTCTCGTTTCTTCACCATAGCAAGAGAAATTGGAATGATGAACGAGGGCTACGCTTGGATCGTAACGGATGGTTTGGCAAATGTATTAGGTTCCTTGAGTTCCTCAGTCATAGAATCAATGCAAGGAGTATTGGGAGTGAGGACCTACATTCCCAAAACAAAACAGCTAGATGATTTTAAAGTTCGATGGAAAAGAAAATTCGTACAAGACAATCCTACTCTTGTTGATACAGATTTGAGTGTTGGAGTATGGGCTTATGATGCTACCACAGCATTAGCTATGGCTGTTGAGAAGGTCGGAACCAATAATCTTGGCTTTGATACGAGCAATGCTTCAGGCAATTTGACTGATCTTGAAGGGTTTGGAGTTTCAGAAAATGGTGAGAAGTTGCGTGAAGCCTTATCAAACACTAGATTTAGAGGCTTAGGTGGAGATTTCTATGTTTCTGACAGGCAGTTGCAAGAGCCGACATTTGAGATAATGAATGTGATTGGAAATGGGGAAAGGAGAATAGGATTTTGGACTTCACAAAATGGAATAGTCAGAAATCTGGACACGACCAACACAAGCATGTCTTCTACCTCAAGCAACAATCTAGGTTCGATCATATGGCCAGGGGATACGTACAGTGTTCCAAAGGGATGGGAAATCCCCACAAATGAGAAAAAATTGAGGATAGGAGTTCCAGTGAAAAGGGGATATGCTGAATTTGTGGATATAACTCGTGATCCTATCACTAATAGAACAGACGTCACTGGGTTCTGCATTGATGTGTTCAAGGCGGTGCTCGAAGTGCTCCCTTATGCCTTACCATATGAATTTATCCCTTTTGCCAAACGCGATGACCAGAGTGCAGGAACATACAATGAGCTGATCAGCCAAGTTTATTACGGGGTAGGCATTTACAGGAAAGTTTTCCTTGGAGTTTTTCTCCCTGACTCAAAGAGGGAGCCTTGTTCTACCTTTACATAA 1671 0.4381 MKKLDYSVVLLSMWTLCCNLGMAQTNETVEVKVGIVLDLSSTTAKVGLSCINMSLSDFYLSHSHYKTRLVFIIRDSRRDVVSAAAQALDLIKSENVQAIIGPLTSMEANFVISLGDKAHVPIITFSATSPSLASSPISYFFRIAQVDSAQVNAIGAIVQAFGWREVVPIYVDNDYGKGVIPFLTNALQQVYARIPYLSAISPSATDADVRGELYKLMTMQTRVFVVHMSTNPGSRFFTIAREIGMMNEGYAWIVTDGLANVLGSLSSSVIESMQGVLGVRTYIPKTKQLDDFKVRWKRKFVQDNPTLVDTDLSVGVWAYDATTALAMAVEKVGTNNLGFDTSNASGNLTDLEGFGVSENGEKLREALSNTRFRGLGGDFYVSDRQLQEPTFEIMNVIGNGERRIGFWTSQNGIVRNLDTTNTSMSSTSSNNLGSIIWPGDTYSVPKGWEIPTNEKKLRIGVPVKRGYAEFVDITRDPITNRTDVTGFCIDVFKAVLEVLPYALPYEFIPFAKRDDQSAGTYNELISQVYYGVGIYRKVFLGVFLPDSKREPCSTFT 556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g1880 556 FunFam Glutamate receptor 320 455 - -
Dere05g1880 556 Gene3D - 153 311 - -
Dere05g1880 556 SUPERFAMILY Periplasmic binding protein-like I 31 449 IPR028082 -
Dere05g1880 556 Gene3D - 26 152 - -
Dere05g1880 556 PANTHER OS06G0188250 PROTEIN 8 415 - -
Dere05g1880 556 CDD PBP1_GABAb_receptor_plant 32 417 IPR044440 -
Dere05g1880 556 Gene3D - 456 533 - -
Dere05g1880 556 SUPERFAMILY Periplasmic binding protein-like II 434 531 - -
Dere05g1880 556 Pfam Receptor family ligand binding region 50 398 IPR001828 -
Dere05g1880 556 FunFam Glutamate receptor 152 310 - -
Dere05g1880 556 Gene3D - 354 455 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g1880 Dere-ChrDere05 28677005 28681073 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g1880 23 531 Ion Channels AT2G24720 51.562 0.0 553