Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g1879 ATGGCGAAGAAGCTCGTACCTCTGCTCTTCCTTGTCTGGACTCTCACTAATTTCCTCTGCGTAGCACAGAAAAAGGAAACTGTAGCAGTGAAAGTCGGAATTATACTTGATCTTGCCAATCCCAACGCCAAGATGGTGTTGAGCGGCGTCAACATGTCCCTCTCTGACTTTTATGTTTCTCATTCTCTTTACAATACCAGGCTCGTCCTCAACGTAAGGGACTCTCACAGAGACGTCGTTACTGCAGCTGCTCAAGATCTCATAAAAACAGAGGAAGTGCAAGCCATAATAGGACCATCAACGTCGATGGAGGCCAACTTTGTGATCAGTCTTGGAGACAAAGCTCATGTGCCCATTGTAACATCTTCAGCGACGAGTCCTTCTCTTGCCTCGTATAGGAGTCCATATTTTTTTCAAATTGCACAAAACGATTCAGCTCAAGTGAATGCCATTAGCGCAATCGTGGAAGCTTTTGGGTGGAAAGAAGCAGTGCCCATATACGTTGACAACGATTATGGGAAGGGAGTGATACCCTTTTTGACCAATGCTCTGCAGCAAGTGTATGCTCGAATCCCATATCTCAGTGCCATTTCTCCTTCAGCCACAGATGAAGACATCAGAGCAGAGCTCGACAAGTTGAAGACCCTGCAAACCAGAGTATTCGTTGTTCACATGTCCACCGATCTTGGCTCTCGTTTCTTCCCCATGGTAAAACAGATTGGCATGATGAGCAAAGGCTACGTTTGGATCGTAACCGATGGTTTGGGAAACTTGTTAAATTCCTTGGATTCCTCAGTCATAGAATCAATGCACGGAGTATTGGGAGTGAGGACCTACATTCCCCAGACGAAACGGCTAGATGATTTTAGAGTTAGATGGAGAAGAAAATTCATACAAGACAATCCTACCCTTGTTGATACCAATTTGAATGCTTTTGGAGTATGGGCATATGATGCCACCACAGCATTGGCAATGGCTGTTGAGAAGGTCGGCTCCAACAATCTTGGGTTCGATATGAGCAATGCTTCAGGCAAATTTTCTGATCTTGAAAGGTTGGGAGTTTCAAAGAATGGGGAAAACCTGAGCGCAGCCTTATCAAACACTAGATTTAGAGGCCTCAGTGGCGAGTTCAGTGTCATTGATGGGCAACTGCAAGCATCGACTTTTGAGATACTCAATGTCAACGGCAATGGGGAAAGGAGGGTTGGAATTTGGTCACCGCAGGCTGGGCTATCGAGGAATCTGAGTTTCACAAATACAAGCACGTATTCTACTAATTCTAGCAAGAATTTAGGGACTATCGTGTGGCCAGGAGATACTTCCTCTCCTCCAAAGGGTTGGGAAATCCCTTTAAATGGGACAAAGTTGAGGATAGGTGTTCCTGTGAAAGATGGTTATACTGAATTCGTGAAGCAAATTCGTGATCCTACCACTAACAAAACAAACTTCACTGGGTTCAGCATCGACGTGTTCAAGGCTGTGCTGGACGTGTTGCCATATGCCTTGCCTTACGAATTTATCCCGTTTCCAAAGCCCAACGGTGAGAGTAGTGCAACATATAATGACCTTATCAGCCAAGTTTTCTATGAGAAGTTCGATGCAGTGGTGGGGGATGTAACAATTATAGCAAACAGGTCTAACTATGTCGATTTCACATTGCCGTACACCGAATCAGGGGTAACAATGATCGTTCCTGTAAAAGACAAGAGGAAGAAGAATGCGTGGGCCTTCTTAAAGCCATTGACTTGGGATCTCTGGGTAACAACTGCTTGTTCCTTTGTGTTCTTTGGGTTTGTTGTGTGGGTGCTTGAACATCGAATAAACAAAAAGTTCAGAGGGCCACCATCGCATCAGATTGGCACCAGCTTATGGTTTTCTTTCTCAACCATGGTTTTTGCACATCGAGAGAAAGTGGAGAGCAACTTGGGCAAATTTGTGGTGACCATATGGGTTTTTGTTATTCTAATTTTGGTTCAAAGTTACACTGCGAGTCTCACGTCGCTCTTGACAGTTGAGCAGCTCACCCCAACTGTAACAGACGTGAATTTACTTATTAAAAATAGGATGAATGTTGGTTACCTCAAAGGTTCTTTTGTATATGATATATTGAAGGATATGGGGTTTCAAGATGATCAGCTAAAATTTTATAATTCTACTCAAGATTGCAATGAACTGTTCACAAAAGGGAGTGCGAATGGTGGAATTGCTGCTGCATTCGATGAAATTCCCTATGTGAAACTCTTCCTTGGAAATTACTGTAACAAGTATGCCATGGAAGAACCAACTTTTAAAACTGGGGGCTTTGGCTTTGTCTTTCCTAAAGGTTCTCCTCTTGTAGCTGACATTTCGAGGGCAATACTGAATGTGACTCAAGGAAGCAAAATGAAAAATATTGAGAATAAATGGCTCAAAAATAATAGTTGTCCACTATCTGGTGCCTCACTTTCTTCCAATAGCCTTGGCCTCGAGAGCTTTTGGGGCCTATTTCTCATTGCAGGAGTTGCTTCCTTGTTAGCTCTTGTCATCTTCGCCATTACATTCTTACACCAGCAAAGACATATTTGGCTACACTATAATCCCAGTACTACAATCTGGGGGCGTATAAGGATCTTGTTAAAGATATTCGACGAAAGAGATGAAAGCTCTCACACTTTCAAAAAAAAGGAAATGGGAGATAAAAGTGAGAGTGATAGTACTCATGGTCTGGGTGCAGTTGAGGCCTCTCCAGCATCACACTGCCCCCCAAGTCCCTCAAGTCAAGCTGAATCCAACTTTTCCTTCTATGGAGATCGTGGAGTGTTTTCAGAAGAGTACGGTGAGGCTAGTCCTAATGGCTATGCACTTCAAGATGTAGAAATAACCATCATGCACAATATACCACCTGCTTCAAACAGAGCTCCAGATTTATGA 2910 0.4344 MAKKLVPLLFLVWTLTNFLCVAQKKETVAVKVGIILDLANPNAKMVLSGVNMSLSDFYVSHSLYNTRLVLNVRDSHRDVVTAAAQDLIKTEEVQAIIGPSTSMEANFVISLGDKAHVPIVTSSATSPSLASYRSPYFFQIAQNDSAQVNAISAIVEAFGWKEAVPIYVDNDYGKGVIPFLTNALQQVYARIPYLSAISPSATDEDIRAELDKLKTLQTRVFVVHMSTDLGSRFFPMVKQIGMMSKGYVWIVTDGLGNLLNSLDSSVIESMHGVLGVRTYIPQTKRLDDFRVRWRRKFIQDNPTLVDTNLNAFGVWAYDATTALAMAVEKVGSNNLGFDMSNASGKFSDLERLGVSKNGENLSAALSNTRFRGLSGEFSVIDGQLQASTFEILNVNGNGERRVGIWSPQAGLSRNLSFTNTSTYSTNSSKNLGTIVWPGDTSSPPKGWEIPLNGTKLRIGVPVKDGYTEFVKQIRDPTTNKTNFTGFSIDVFKAVLDVLPYALPYEFIPFPKPNGESSATYNDLISQVFYEKFDAVVGDVTIIANRSNYVDFTLPYTESGVTMIVPVKDKRKKNAWAFLKPLTWDLWVTTACSFVFFGFVVWVLEHRINKKFRGPPSHQIGTSLWFSFSTMVFAHREKVESNLGKFVVTIWVFVILILVQSYTASLTSLLTVEQLTPTVTDVNLLIKNRMNVGYLKGSFVYDILKDMGFQDDQLKFYNSTQDCNELFTKGSANGGIAAAFDEIPYVKLFLGNYCNKYAMEEPTFKTGGFGFVFPKGSPLVADISRAILNVTQGSKMKNIENKWLKNNSCPLSGASLSSNSLGLESFWGLFLIAGVASLLALVIFAITFLHQQRHIWLHYNPSTTIWGRIRILLKIFDERDESSHTFKKKEMGDKSESDSTHGLGAVEASPASHCPPSPSSQAESNFSFYGDRGVFSEEYGEASPNGYALQDVEITIMHNIPPASNRAPDL 969
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g1879 969 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 30 884 IPR015683 -
Dere05g1879 969 SMART GluR_14 455 805 IPR001320 GO:0015276|GO:0016020
Dere05g1879 969 Pfam Receptor family ligand binding region 47 397 IPR001828 -
Dere05g1879 969 MobiDBLite consensus disorder prediction 883 922 - -
Dere05g1879 969 FunFam Glutamate receptor 574 704 - -
Dere05g1879 969 PIRSF IGluLR_plant 1 927 IPR017103 -
Dere05g1879 969 FunFam Glutamate receptor 2.7 711 810 - -
Dere05g1879 969 Gene3D - 574 705 - -
Dere05g1879 969 Gene3D - 456 573 - -
Dere05g1879 969 FunFam Glutamate receptor 354 454 - -
Dere05g1879 969 Gene3D - 346 455 - -
Dere05g1879 969 Pfam Ligand-gated ion channel 805 835 IPR001320 GO:0015276|GO:0016020
Dere05g1879 969 Gene3D - 752 810 - -
Dere05g1879 969 Gene3D - 145 310 - -
Dere05g1879 969 FunFam Glutamate receptor 455 574 - -
Dere05g1879 969 SUPERFAMILY Periplasmic binding protein-like II 432 806 - -
Dere05g1879 969 CDD GluR_Plant 455 803 - -
Dere05g1879 969 Pfam Bacterial extracellular solute-binding proteins, family 3 480 804 IPR001638 -
Dere05g1879 969 CDD PBP1_GABAb_receptor_plant 31 415 IPR044440 -
Dere05g1879 969 FunFam Glutamate receptor 147 307 - -
Dere05g1879 969 SUPERFAMILY Periplasmic binding protein-like I 30 448 IPR028082 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g1879 Dere-ChrDere05 28666648 28670618 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g1879 20 922 Ion Channels AT2G29120 51.872 0.0 910