Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g1875 ATGAAACTTGTGAGTTTTTTTGCCATCTTCTTTATTACAACGTGGAGTTGCTTGGCCATGGGACCAAATACAACGACGGTCCCAGTAAATGTTGGTGTGGTTGTGGATGCAGACACTTGGATTGGGAAGTTGGGTTTGAGCTGCATCAACATAGCCTTCTCCGACTTCTATGCTTCCCACACTTACCATAAAACTAGGATTGTTCCCAACATCAGGCTCTCCAACTCAGACATGATTTCAGCTGCTTCAGCAGCTATAGATTTGATAAAAAATGCAGAGCAAGTTTATCACGGGGAAATTGATGCAGTGGTAGGAGATATTACGATTAAGTTTAAGAGGTCCCAGTATGTGGACTTCACGTTCCCCTTCACCGAAAGCGGAGCAGCTTTCTTAGTGCCAACCAAAGAGAGGAACAAGACAAAGGCTTGGGTTTTCTTGAAGCCTTTGACATGGGAACTATGGCTCACAAGTGGCTGCTTTTTTGTCTTCATTGGTTTTGTGGTTTGGGTGCTAGAACACCGAATCAACGACGAATTCAGGGGTACCCCCTCAGATCAAGTTGGCACTAGCTTTTGGTTTTCCTTCTCAACAATGGTTTTTGCCCAGAAGGAGAAAATCCACAGCAACTTGGCGAGAGTAGTGGTGATCATATGGGTATTTGTAGTGCTCATACTGACTCAAAGTTACACTGCTAGTTTCACAACGCTTTTGACCGTTCAACAGCTTCGACCGGCTGTGACTGATGTGAATCAACTCCTTCAGAGTGGGGACTCTGTTGGTTACCAATTTGGTTCTTACACTTACGGCATATTAAAGCAAATGGGGTTCGATGAAAGCAGGCTTCGACCTTACTATTCTCCAGAAGAATGTGATCAACTTCTGACAATTGGAAGCGAACACGGAGGTATTGCTGCCGCTTTTGATGAAATCCCGTATCTTAAGCTCATGCAGGTGAATGATTGCTCCAAATATACCACGATGGGACCTACTTATAAATCTCCAGGATTTGGTTTTGCCTTCAGAAGAAATTCCCCTCTCGTAACTGATGTTTCAAGGGCTATACTAAACTTGACAGAGCAGAATCAAGATACGATGAAAGCAATTGAACAGAGATGGTTCAAGAATGAAAGCCGTTGTATGCAGCCCTCAGCTGTGGACGCTACCTATAGTCTTGATCTTGACAACTTCCGTGGACTGTTCCAAGTTGCAGGGGTGGCTTCTTCCTCGGCTCTTGTCATACACATAGCTATCTTCCTTTTCGGGAATAGGCAACACTTGAAGCGCTTTGATCCACAAGACTCCATCGGGAAAAGAATTTGGGTCATGTTAAAAGTCTTCTACCACAATGACCCCACATTCGCTGGTTTTGAAAATAGTACAGATCAAATCCCCGAAGCTACCATTAAGATTGGTGATGTAATAGATGTGGCTCAAGCCTCAAGTTCACCAAGGCACTTGAACCAAGCATAA 1470 0.4408 MKLVSFFAIFFITTWSCLAMGPNTTTVPVNVGVVVDADTWIGKLGLSCINIAFSDFYASHTYHKTRIVPNIRLSNSDMISAASAAIDLIKNAEQVYHGEIDAVVGDITIKFKRSQYVDFTFPFTESGAAFLVPTKERNKTKAWVFLKPLTWELWLTSGCFFVFIGFVVWVLEHRINDEFRGTPSDQVGTSFWFSFSTMVFAQKEKIHSNLARVVVIIWVFVVLILTQSYTASFTTLLTVQQLRPAVTDVNQLLQSGDSVGYQFGSYTYGILKQMGFDESRLRPYYSPEECDQLLTIGSEHGGIAAAFDEIPYLKLMQVNDCSKYTTMGPTYKSPGFGFAFRRNSPLVTDVSRAILNLTEQNQDTMKAIEQRWFKNESRCMQPSAVDATYSLDLDNFRGLFQVAGVASSSALVIHIAIFLFGNRQHLKRFDPQDSIGKRIWVMLKVFYHNDPTFAGFENSTDQIPEATIKIGDVIDVAQASSSPRHLNQA 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g1875 489 Gene3D - 57 140 - -
Dere05g1875 489 FunFam Glutamate receptor 142 272 - -
Dere05g1875 489 Gene3D - 141 269 - -
Dere05g1875 489 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 93 438 IPR015683 -
Dere05g1875 489 Pfam Ligand-gated ion channel 375 406 IPR001320 GO:0015276|GO:0016020
Dere05g1875 489 Gene3D - 338 373 - -
Dere05g1875 489 Pfam Bacterial extracellular solute-binding proteins, family 3 94 374 IPR001638 -
Dere05g1875 489 SUPERFAMILY Periplasmic binding protein-like II 94 375 - -
Dere05g1875 489 SMART GluR_14 65 375 IPR001320 GO:0015276|GO:0016020
Dere05g1875 489 Gene3D - 306 337 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g1875 Dere-ChrDere05 28604601 28607975 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g1875 94 459 Ion Channels AT2G29100 51.639 3.44e-115 359