Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g1874 ATGGAGCATGACACTATTGAGGACATGGACATTGAAGTCCTGCCTTCGATGTGGCCCGAAGATATTGGAAGTGACGTAAAAAAACAATTTAACATAGAGAAGCCTGGAAGTGACCAGGACATGTTGGAGGAGGTCACAATAATAGATGAGCCAACTATAGTTGATTTCAAGCGTCTCATGGAGCTCACCAATTATACAGACAAAGGGTCGTCTCAGTTGACCTATCTTATGAAACACTGGGAGTACAAGCAGGCCAATGCTGTGCGTCTTCTAAGAGAAGAACTAGACAACCTAAGTAAACAGAGACAGGAAGTTGAGCTGAGGAAGTTGAAGATATTGGAGGAGCATCGATTTGAGGAAGAAAGATATGGGCGTGATAAACGACCAGTTTCAATCTTGGATGAAGTTTATGATTTATGGCAAGAAATACCACGCAGGAAAAAGGACGTTGTTGTTCAAAACAAGGGTTTTGAAATAGATGCTGAGTATGATACTGTAGTGTACTGGAAGCAGAGAGCCCTGCATCTAGAAAAACTGTTGGAGGCAAGTATACAGAGAGAGCAGACACTTATGGAGAAGCTGGAAGAAAGCATAAAGAATCTTGAAAGGCAGTCCTCGCCTGTGGAAGAATTGTCCCAGATTCTGAAAAGGGCAGATAATTTCTTGCATTTTATTCTGCAGAACGCACCTGTTGTCATAGGCCATCAGGACAAAGAGTTGCGCTACCGCTTTATCTATAACCATTTCCCTAGATTACAAGAGGAGGACATTATAGGAAGAACAGACGTGGAAATTTTCACGGGATCTGGTGTTAAGGAATCTCAAGATTTCAAGAGAGAAGTTCTGGAAAAGGGGTTGCCTGCAAAAAGGGAAATTACTTTCGAGACAGAACTATTTGGGTCGAAGACTTTCTTAATTTATGTGGAACCTGTCTTTAGCAAGGCAGGGGAGACACTGGGTATAAATTACATGGGCATGGATGTAACAGATCAGGTGAGAAAAAGAGAAAGGATGGCAAGGCTTAGGGAAGAGATTGCAGTTCGGAAAGCCAAGGAATCAGAACTAAATAAAACCATTCACATAACAGAGGAGACTATGCGAGCCAAACAAATGCTAGCAACCATGTCTCATGAGATAAGATCTCCATTGTCTGGGGTTGTTAGCATGGCTGAAATTCTTTCTACCACAAAACTAGATAAGGAGCAAAGGCAGCTCTTGGAAGTCATGCTTTCCTCGGGAGATTTGGTTCTTCAACTTATAAATGACATATTAGATCTTTCCAAGGTTGAGTCAGGAGTAATGAAGTTAGAAGCTACCAAGTTCCGTCCAAGAGAGGTAGTAAGGCATGTGCTCCAGACTGCTGCAGCATCATTGCAGAAAATATTAACCTTAGAAGGTCATGTGGCAGATGATGTACCCGTTGAGGTCATTGGAGATGTCTTAAGGATTCGGCAAATTCTCACAAATCTAATCAGCAATGCAGTCAAGTTTACCCATGAAGGCAAAGTTGGCATAAATGTTTACGTTGTAGCAGAGCCAAGTTTTGCAAAATCGGAAGAAAGCCTCCAAAAGATGGGTGATGACAAGTCAAATGCTTCGGCGAATGGACTGACAGAAGAGAAATATCTCTCAGCGTCTCATAGTGGGAGCGACGAATGTATATCTCCGGTTAAAAGCGAATGCTCAAGAAATGGAGATACTGAGGAGCAACCTCATTCAACCGAAACAACAGTGTGGATCCGTTGTGATGTATGCGACACGGGAATCGGAATACCAGAAAAAGCAATACCTACCCTCTTTAAAAGGTACATGCAAGTCAGCGCGGACCACGCTCGAAAGTACGGTGGCACAGGACTAGGACTAGCAATATGCAAACAGCTGGTTGAGTTGATGGGTGGTCGTCTAACGGTGTCGAGCAAAGAACATTGTGGTTCTACATTTACGTTCATACTCCCGTACAAGGTTTCTACAGCTTGTGACCATCCAGACGACTCCGACGAGCTCTCAGATGTGGAGAGTAACGACGCTGCGTCTGATGATACCACGGAGGGTTTCTTCCAATTCCAACCTCGTACTTTGGGCTCTCTCTTCTCTTCTAATGGATCTACTAGAGCCCAAAAGTTGTTACCCCATAAAATTGGGTTCACAGGCTCACATAAATTAAATGGGTTTTCGGAGAATTCTTACTCATTCCACTCGAATAACATCGTATCAAATGGGACACCTTCAGTTGAATATGCATCCCAAGTGACAGTTATTGATGCGCCGGAGATGTCTGAATCAGGAAGTTCGTGGAGTCACAACCCAGAAACGGAGAACGAAAATGTAATTATCAGAGACAAGCAACAAAAGACATATGCTAAGCCCCAAAATGGTAGCGCAAGCAGAGAAATTGGTGAAGCGACAAAGTCAAGCGAAACCCAGCAAACTAGTGAGACACAAGAGAAGGATAACAGAACCTCCCAATGTGTTACTAGCAGCAGTACTAGTACATCAGCGGTAGCCAAACCAACATTAGAGCCTAAGATCCTTCTTGTTGAAGATAACAAGATCAACGTTATGGTGACACAGTCAATGATGAAGCAGCTAGGTCACAGCATAGAGGTGGTGAATAATGGAGTGGAAGCTGTGCGTGCAGTTCAGAGCAGGAGTTATGACCTCATTTTAATGGTACTTTCTGGAGTATTTGTGCTTCTGAGAATTGGATTGTTTACTTGTACAATGAAATGGTTTGTTTATGGGAATAATTTGAATAATTATGGTACTTCCAATTTGCAGGATGTGTGCATGCCAGTTATGAATGGTCTTCAAGCAACAACATTGATTCGCTCTTTTGAGGAAACTGGAAATTGGGATGCTGCAACAAAAGCTGGAATAGAACCAAGCGTTTCAGCTTTAGATTTGCATAAAACTGAATGTTCTCTTCCTTCCACAAAGCGAATGCCCGTTATCGCAATGACGGCAAATGCTTTGTCAGAGAGTGCGGAAGAGTGTTATGCAAATGGTATGGACTCATTTGTGTCGAAACCTGTGACTTTCCAGAAATTGAAGGAGTGCCTTGAACAATACCTACGGTGA 3078 0.4285 MEHDTIEDMDIEVLPSMWPEDIGSDVKKQFNIEKPGSDQDMLEEVTIIDEPTIVDFKRLMELTNYTDKGSSQLTYLMKHWEYKQANAVRLLREELDNLSKQRQEVELRKLKILEEHRFEEERYGRDKRPVSILDEVYDLWQEIPRRKKDVVVQNKGFEIDAEYDTVVYWKQRALHLEKLLEASIQREQTLMEKLEESIKNLERQSSPVEELSQILKRADNFLHFILQNAPVVIGHQDKELRYRFIYNHFPRLQEEDIIGRTDVEIFTGSGVKESQDFKREVLEKGLPAKREITFETELFGSKTFLIYVEPVFSKAGETLGINYMGMDVTDQVRKRERMARLREEIAVRKAKESELNKTIHITEETMRAKQMLATMSHEIRSPLSGVVSMAEILSTTKLDKEQRQLLEVMLSSGDLVLQLINDILDLSKVESGVMKLEATKFRPREVVRHVLQTAAASLQKILTLEGHVADDVPVEVIGDVLRIRQILTNLISNAVKFTHEGKVGINVYVVAEPSFAKSEESLQKMGDDKSNASANGLTEEKYLSASHSGSDECISPVKSECSRNGDTEEQPHSTETTVWIRCDVCDTGIGIPEKAIPTLFKRYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVSSKEHCGSTFTFILPYKVSTACDHPDDSDELSDVESNDAASDDTTEGFFQFQPRTLGSLFSSNGSTRAQKLLPHKIGFTGSHKLNGFSENSYSFHSNNIVSNGTPSVEYASQVTVIDAPEMSESGSSWSHNPETENENVIIRDKQQKTYAKPQNGSASREIGEATKSSETQQTSETQEKDNRTSQCVTSSSTSTSAVAKPTLEPKILLVEDNKINVMVTQSMMKQLGHSIEVVNNGVEAVRAVQSRSYDLILMVLSGVFVLLRIGLFTCTMKWFVYGNNLNNYGTSNLQDVCMPVMNGLQATTLIRSFEETGNWDAATKAGIEPSVSALDLHKTECSLPSTKRMPVIAMTANALSESAEECYANGMDSFVSKPVTFQKLKECLEQYLR 1025
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g1874 1025 CDD HisKA 366 428 IPR003661 GO:0000155|GO:0007165
Dere05g1874 1025 FunFam Histidine kinase 5 209 344 - -
Dere05g1874 1025 Pfam His Kinase A (phospho-acceptor) domain 369 432 IPR003661 GO:0000155|GO:0007165
Dere05g1874 1025 Gene3D - 355 432 - -
Dere05g1874 1025 MobiDBLite consensus disorder prediction 784 831 - -
Dere05g1874 1025 SUPERFAMILY CheY-like 841 890 IPR011006 -
Dere05g1874 1025 ProSiteProfiles Response regulatory domain profile. 842 1024 IPR001789 GO:0000160
Dere05g1874 1025 Gene3D - 837 1025 - -
Dere05g1874 1025 CDD HATPase_EvgS-ArcB-TorS-like 483 652 - -
Dere05g1874 1025 FunFam Putative histidine kinase 5 355 432 - -
Dere05g1874 1025 CDD REC_hyHK_CKI1_RcsC-like 843 1020 - -
Dere05g1874 1025 SUPERFAMILY PYP-like sensor domain (PAS domain) 212 329 IPR035965 -
Dere05g1874 1025 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 367 432 IPR036097 GO:0000155|GO:0007165
Dere05g1874 1025 Gene3D PAS domain 209 345 - -
Dere05g1874 1025 SMART HisKA_10 367 432 IPR003661 GO:0000155|GO:0007165
Dere05g1874 1025 PANTHER TWO-COMPONENT HISTIDINE PROTEIN KINASE 9 1024 - -
Dere05g1874 1025 Coils Coil 88 115 - -
Dere05g1874 1025 MobiDBLite consensus disorder prediction 662 682 - -
Dere05g1874 1025 Coils Coil 177 211 - -
Dere05g1874 1025 SMART HKATPase_4 478 655 IPR003594 -
Dere05g1874 1025 SUPERFAMILY CheY-like 925 1025 IPR011006 -
Dere05g1874 1025 Gene3D - 433 659 IPR036890 -
Dere05g1874 1025 MobiDBLite consensus disorder prediction 757 772 - -
Dere05g1874 1025 MobiDBLite consensus disorder prediction 757 831 - -
Dere05g1874 1025 PRINTS Bacterial sensor protein C-terminal signature 639 652 IPR004358 GO:0016310|GO:0016772
Dere05g1874 1025 PRINTS Bacterial sensor protein C-terminal signature 580 594 IPR004358 GO:0016310|GO:0016772
Dere05g1874 1025 PRINTS Bacterial sensor protein C-terminal signature 615 633 IPR004358 GO:0016310|GO:0016772
Dere05g1874 1025 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 421 655 IPR036890 -
Dere05g1874 1025 ProSiteProfiles Histidine kinase domain profile. 374 655 IPR005467 -
Dere05g1874 1025 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 478 653 IPR003594 -
Dere05g1874 1025 SMART REC_2 841 1020 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g1874 Dere-ChrDere05 28598623 28603477 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g1874 1 1024 Histidine Kinase Gene Family AT5G10720 58.033 0.0 1129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Dere05g1874 HATPase_c 2.6e-27 CL0025