Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g1867 ATGGCTACTACAACTCCTACCAATATTGACTCGGATCATCAGACTCCCAGAAGCAGCGAGTCTTGCTCCAGTAAGTACAAAGGCGTGAGGAAGCGAAAATGGGGGAAATGGGTGTCTGAAATCAGGCTTCCCAATAGCCGCGAGCGCATATGGTTAGGGTCTTACGATTCTCCCGAGAAGGCGGCTCGAGCCTTCGACGCTGCGCTTTACTGCCTGCGCGGCCCTCATGCCAACTTCAATTTCCCTCGCACCCCTTTGGAGTTGGAGCTCACTCTCTCTGCTGATCATCAATCCCTTTCTCCTCAGAAAATCCAGGAGCTTGCTGCTAGGTTTGCCAACGAGCACCAGCAAGACCCACCACTGCTCCACCAGTCCTCTTCCCAGCCTCCTGCTTCTTCCTCTTGCTTTGATTCCGACAGGGTTACGGAGAGTGGTTATAATGATATGTATGATGGGACGGCTCTGCAAGTGGACCAACAGGTTGGAGACATAAGGGGCCTTGATTGGTCGTTTTTGAACTCGCTGGATGATGCTGGTAATTTTGATTATTATTATAACAATGGACTCTGCTATGGCCTTGACAAGATGCACTCTGGTGAGTTATATCCCACGTCGCCACCTCCTTTGCTCACCGATAATGATCATAATGGAGACGCTTTTGAATGCGATGATGCTTTTTCCCAGCAATCATTATTCCTGTGGAACTTTGAATCATCTTAA 720 0.4917 MATTTPTNIDSDHQTPRSSESCSSKYKGVRKRKWGKWVSEIRLPNSRERIWLGSYDSPEKAARAFDAALYCLRGPHANFNFPRTPLELELTLSADHQSLSPQKIQELAARFANEHQQDPPLLHQSSSQPPASSSCFDSDRVTESGYNDMYDGTALQVDQQVGDIRGLDWSFLNSLDDAGNFDYYYNNGLCYGLDKMHSGELYPTSPPPLLTDNDHNGDAFECDDAFSQQSLFLWNFESS 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g1867 239 Gene3D AP2/ERF domain 24 83 IPR036955 GO:0003700|GO:0006355
Dere05g1867 239 MobiDBLite consensus disorder prediction 117 138 - -
Dere05g1867 239 SUPERFAMILY DNA-binding domain 24 83 IPR016177 GO:0003677
Dere05g1867 239 CDD AP2 24 82 IPR001471 GO:0003700|GO:0006355
Dere05g1867 239 FunFam Ethylene-responsive transcription factor 2 24 83 - -
Dere05g1867 239 ProSiteProfiles AP2/ERF domain profile. 25 82 IPR001471 GO:0003700|GO:0006355
Dere05g1867 239 MobiDBLite consensus disorder prediction 118 138 - -
Dere05g1867 239 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 12 142 - -
Dere05g1867 239 SMART rav1_2 25 88 IPR001471 GO:0003700|GO:0006355
Dere05g1867 239 MobiDBLite consensus disorder prediction 1 23 - -
Dere05g1867 239 MobiDBLite consensus disorder prediction 1 28 - -
Dere05g1867 239 PRINTS Ethylene responsive element binding protein signature 48 64 IPR001471 GO:0003700|GO:0006355
Dere05g1867 239 PRINTS Ethylene responsive element binding protein signature 26 37 IPR001471 GO:0003700|GO:0006355
Dere05g1867 239 Pfam AP2 domain 24 74 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g1867 Dere-ChrDere05 28477341 28478060 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g1867 18 236 AP2-EREBP Transcription Factor Family AT1G19210 41.256 2.18e-43 143
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Dere05g1867 AP2 5.6e-13 CL0081