Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g1849 ATGGCGACTCATCTACTGAGACTTTCTCTCTCCTCTCAACCTGAGCTCTGCTTCAATTACAGAAGAAACCGTGATGTCCACGGCGTTGACTTCATTTCTAGACTGCCGGTAGAACGACGTCGCAGCTTCAGACGCTGGAGCATTCCCCGGCCCCATTCGGGCCCAAACTTTGTCATATTAAACTCCCTTGAAACTAGAATTGACTCAGCCGATGCAACCCTGCGAGGCCAGGGAAAGAGCAAAGATTCGCCCGTTGTACTAGATGTTACTGGAATGATGTGTGGAGCTTGCGTCTCCCGAGTAAAAAACATTTTGTCCGCCGATGAGCGAGTTGATTCGGTTGTCGTCAATATGTTGACTGAGACTGCCGCCGTTAAGTTGAAAAAACGCGAGGAGGCACCGGCGGGGGCTTCAGTTCTGGAGACCGATTATCCGGGAATAGTAGCAGAGGCCCTTGCTCAGAGACTGACTGAATGCGGTTTTCCGACAAAACGGAGGGTTTCGGACATGGGAGTGGCGGAAAATGTGAGGAAGTGGAAGGATTTGGTGAAGAAGAAGGAGGAACTGCTTGTGAAGAGTCGGAACCGTGTTGCCTTTGCTTGGACTTTGGTGGCGTTGTGTTGTGGATCGCATGCTTCGCATATATTCCATTCTTTAGGAATCCACATTGCTCACGAACCCCTATGGGAATGGCTTCATAATTCATATGTGAAAGGTGGTTTAGCTTTGGGGGCTCTGCTGGGACCGGGTCGAGAATTACTGGTTGATGGCCTAAGAGCGTTTAGAAAGGGATCACCAAATATGAACTCTCTTGTGGGATTTGGTTCTATAGCTGCCTTTATCATCAGTTCGATCTCACTACTTAATCCTGGGCTGGCATGGGATGCATCATTCTTTGATGAGCCGGTCATGCTTCTTGGTTTTGTGCTTCTTGGACGTTCTTTGGAAGAAAAGGCAAGGATTCAGGCATCTAGTGATATGAACGAACTTCTTTCACTGATATCTACTCAATCAAGACTTGTGATTACTTCCTCAGAAGGTGCCCCATCTATGGCCAGTGTGCTTTGCTCTGATGCAGTTTGTGTTGAAGTCCCAACTGACAATATCCGAGTAGGTGACTCAGTGTTGGTGTTGCCTGGAGAAACTATTCCTATAGATGGAAGGGTCATATCAGGAAGAAGTGTTGTGGATGAATCCATGCTTACAGGTGAATCACTTCCTGTGTTTAAAGAAGAAGGCTTCATAGTTTCAGCTGGAACTATAAATTGGGATGGTCCTTTAAGGATTGAAGCTTCTTCTACTGGCTCCAACACAATGTTATCCAAAATCGTCCGCATGGTTGAGGATGCTCAATCACGTGAAGCACCTGTACAAAGGCTTGCAGATTCAATAGCTGGCCCATTTGTATACAGTGTAATGACTTTGTCAGCAGCAACATTTGCATTTTGGTATTTTATTGGATCACATGTTTTTCCAGATGTTTTGCTTAATGATATTGCAGGCCCAGAAGGAGATCCCTTGCTTTTGAGCTTGAAACTCTCTGTAGATGTCTTGGTTGTGTCTTGCCCTTGTGCACTGGGTCTTGCCACACCCACAGCAATCCTAGTCGGCACCTCACTTGGGGCAAGAAAAGGACTTCTCATTAGAGGAGGAGATGTGCTAGAACGCTTAGCTAGCATAAATTATGTTGCTCTGGACAAGACAGGAACCATCACCAGAGGAAAACCAGTTGTCTCTGCTGTGGGCTCTTTTGATTATGGAGAGTCAGAAATTCTTCAGATTGCTGCTGCAGTGGAGAAAACAGCATCTCATCCAATAGCAAAGGCTATTATCAATAAAGCTGAGTCATTAGAATTGGTCCTTCCAGTCACAAAAGGGCAATTAGTTGAACCAGGGTTTGGAACCTTGGCAGAGATAGATGGACGTTTGGTTGCAGTTGGTTCTTTGGAGTGGGTACATGAGCGCTTCCAGACAAGAATGAACTCATCTGATCTGATGAATCTGGAACATGTTTTGATGAATCAATCATCTAAGAATATACCTTCAAACTATTCAAAAACCATTGTTTATGTTGGACGTGAAGGAGAAGGCATCATTGGTGCTATTGCCATATCTGACATGTTGCGTGATGATGCTGAATCTACTGTAATGAGACTCCAGCAGAAGGGTATTAAAGCGGTCCTCTTATCAGGGGACAGGGAAGAGGCAGTTGCAACAATAGCAGAGACAGTTGGGATAGAAAGGAATTTAGTCAAATCATCATTGTCTCCGCAGCAGAAATCTAAATTTATATCATCGCTTAAGGCTGCTGGACATTGTGTTGCAATGGTAGGTGATGGGATAAATGATGCACCATCTTTGGCTATAGCTGATGTTGGGATAGCTCTGCAGAATGAAGCTCAAGAGAATGCAGCATCAGATGCAGCATCCATTATACTTATTGGGAATAAAATTTCACAAGTTGTGGATGCCCTAGACCTGGCACAGGCAACCATGGCAAAAGTGTATCAGAATTTGTCTTGGGCAGTAGCTTATAATGTTGTTGCCATACCAATTGCTGCTGGTGTGTTACTTCCCCAATTTGATTTTGCCATGACACCTTCACTTTCAGGAGGGTTGATGGCTTTAAGCTCCATTTTCGTGGTTGCCAACTCCTTGCTTCTACAGCTTCATGAGTACAGGACAACGACTAGGGGCTAG 2700 0.4519 MATHLLRLSLSSQPELCFNYRRNRDVHGVDFISRLPVERRRSFRRWSIPRPHSGPNFVILNSLETRIDSADATLRGQGKSKDSPVVLDVTGMMCGACVSRVKNILSADERVDSVVVNMLTETAAVKLKKREEAPAGASVLETDYPGIVAEALAQRLTECGFPTKRRVSDMGVAENVRKWKDLVKKKEELLVKSRNRVAFAWTLVALCCGSHASHIFHSLGIHIAHEPLWEWLHNSYVKGGLALGALLGPGRELLVDGLRAFRKGSPNMNSLVGFGSIAAFIISSISLLNPGLAWDASFFDEPVMLLGFVLLGRSLEEKARIQASSDMNELLSLISTQSRLVITSSEGAPSMASVLCSDAVCVEVPTDNIRVGDSVLVLPGETIPIDGRVISGRSVVDESMLTGESLPVFKEEGFIVSAGTINWDGPLRIEASSTGSNTMLSKIVRMVEDAQSREAPVQRLADSIAGPFVYSVMTLSAATFAFWYFIGSHVFPDVLLNDIAGPEGDPLLLSLKLSVDVLVVSCPCALGLATPTAILVGTSLGARKGLLIRGGDVLERLASINYVALDKTGTITRGKPVVSAVGSFDYGESEILQIAAAVEKTASHPIAKAIINKAESLELVLPVTKGQLVEPGFGTLAEIDGRLVAVGSLEWVHERFQTRMNSSDLMNLEHVLMNQSSKNIPSNYSKTIVYVGREGEGIIGAIAISDMLRDDAESTVMRLQQKGIKAVLLSGDREEAVATIAETVGIERNLVKSSLSPQQKSKFISSLKAAGHCVAMVGDGINDAPSLAIADVGIALQNEAQENAASDAASIILIGNKISQVVDALDLAQATMAKVYQNLSWAVAYNVVAIPIAAGVLLPQFDFAMTPSLSGGLMALSSIFVVANSLLLQLHEYRTTTRG 899
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g1849 899 SFLD p-type atpase 547 830 IPR044492 -
Dere05g1849 899 SUPERFAMILY Calcium ATPase, transduction domain A 357 447 IPR008250 -
Dere05g1849 899 FunFam Copper-transporting ATPase PAA2, chloroplastic 575 708 - -
Dere05g1849 899 Gene3D - 575 708 IPR023299 GO:0000166
Dere05g1849 899 SUPERFAMILY HMA, heavy metal-associated domain 84 129 IPR036163 GO:0046872
Dere05g1849 899 PANTHER ATP7, ISOFORM B 80 890 - -
Dere05g1849 899 Gene3D - 82 166 - -
Dere05g1849 899 Gene3D - 320 451 - -
Dere05g1849 899 CDD HMA 86 162 IPR006121 GO:0046872
Dere05g1849 899 ProSitePatterns E1-E2 ATPases phosphorylation site. 566 572 IPR018303 -
Dere05g1849 899 FunFam Copper-transporting ATPase 1, putative 320 451 - -
Dere05g1849 899 NCBIfam heavy metal translocating P-type ATPase 268 888 IPR027256 GO:0006812|GO:0016020|GO:0019829
Dere05g1849 899 ProSiteProfiles Heavy-metal-associated domain profile. 83 164 IPR006121 GO:0046872
Dere05g1849 899 SUPERFAMILY Calcium ATPase, transmembrane domain M 298 690 IPR023298 -
Dere05g1849 899 PRINTS P-type cation-transporting ATPase superfamily signature 700 711 - -
Dere05g1849 899 PRINTS P-type cation-transporting ATPase superfamily signature 564 578 - -
Dere05g1849 899 PRINTS P-type cation-transporting ATPase superfamily signature 722 732 - -
Dere05g1849 899 PRINTS P-type cation-transporting ATPase superfamily signature 397 411 - -
Dere05g1849 899 PRINTS P-type cation-transporting ATPase superfamily signature 777 796 - -
Dere05g1849 899 Pfam haloacid dehalogenase-like hydrolase 560 791 - -
Dere05g1849 899 NCBIfam HAD-IC family P-type ATPase 353 869 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Dere05g1849 899 SFLD Haloacid Dehalogenase 547 830 - -
Dere05g1849 899 SUPERFAMILY HAD-like 563 885 IPR036412 -
Dere05g1849 899 Pfam Heavy-metal-associated domain 86 132 IPR006121 GO:0046872
Dere05g1849 899 Pfam E1-E2 ATPase 349 544 - -
Dere05g1849 899 Gene3D - 555 828 IPR023214 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g1849 Dere-ChrDere05 28315094 28325346 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g1849 250 892 Primary Pumps ATPases AT1G63440 35.616 1.12e-114 372