Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g1839 ATGGTGAGCACTACTTTTCGCGGTAACGAGGGACAGAAAAGGGAGGCTTGGACAGCTCAAGAAGACAATATACTAGCAAGTTATATCAGGAAACATGGTGAAGGCAAATGGATAAACGTCCCCAAACAAACAGGTCTGAGGAGAAGTGGAAAGTCCTGTAGGCTTCGGTGGATGAATTTTCTAAGGCCAGATATTAAGAGAGGCAACATTACAGAAGACGAAGAGGACCTCATCCTCAGGCTCCACAAGCTCTTGGGCAACAGATGGTCACTGATAGCAGGAAGACTTCCGGGGCGAACAGACCATGAAATAAAAAACTACTGGAACACCTACTTAGCGAAGAGGGAGCAAGAGAAGCAATCATATAATACATGTCAACATGAGAAAAAAGAAATTGCAGAAGCAGGAATCTCCCATGTCTATGATGAGGCTTCAGAGGGGGTTACTTTGCAGCCCATGGCATCACCAAGCACCCACATGGTGTTAGACACACTAAACCCAATCAAACCCACAATTGATTGTAATGGTCATTCTGATGTCGCAACTGTAGAACCTGTTGTTATCGACAGGCAATCAACACCAAGGAATTATGAGGAAGAAAAGGCAGATGGCTCTTTTATGGATTTCGATTTCGGGGACGTTTCGTTTTTGGAATTTCTAGACTTGGATTTTGCACAACTGACAGATTGTGAGATGTTAGACACGAGCAGTTTGAAACCAGAAGGAAGCAAGAGTGAGTCTCCGCCACTTTAA 753 0.4422 MVSTTFRGNEGQKREAWTAQEDNILASYIRKHGEGKWINVPKQTGLRRSGKSCRLRWMNFLRPDIKRGNITEDEEDLILRLHKLLGNRWSLIAGRLPGRTDHEIKNYWNTYLAKREQEKQSYNTCQHEKKEIAEAGISHVYDEASEGVTLQPMASPSTHMVLDTLNPIKPTIDCNGHSDVATVEPVVIDRQSTPRNYEEEKADGSFMDFDFGDVSFLEFLDLDFAQLTDCEMLDTSSLKPEGSKSESPPL 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g1839 250 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Dere05g1839 250 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Dere05g1839 250 CDD SANT 16 61 IPR001005 -
Dere05g1839 250 Gene3D - 71 136 - -
Dere05g1839 250 Gene3D - 7 67 - -
Dere05g1839 250 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Dere05g1839 250 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Dere05g1839 250 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Dere05g1839 250 SMART sant 66 114 IPR001005 -
Dere05g1839 250 SMART sant 13 63 IPR001005 -
Dere05g1839 250 CDD SANT 71 112 IPR001005 -
Dere05g1839 250 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 9 131 - -
Dere05g1839 250 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Dere05g1839 250 FunFam MYB-related transcription factor 13 66 - -
Dere05g1839 250 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g1839 Dere-ChrDere05 28209568 28210604 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g1839 11 158 MYB Transcription Factor Family AT3G13540 58.000 1.11e-53 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Dere05g1839 Myb_DNA-binding 8.5e-13 CL0123