Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g1838 ATGCATGTGCCACTGGTTGTATATAAGAATAAGGGCTTCCCACAGAGAGAGAGAGAGAGAGAGAAAGAGGTTAAAGAGAGAGGAGAGATGGGGAGGAGTCCGTGTTGCTCCAAGGAAGGACTGAACAGAGGAGCCTGGACTGCTCTGGAGGACAAGTTACTTATCTCTTATGTTCAGGCACACGGCGAAGGCAAGTGGCGAAACCTCCCCCAAAGAGCCGGCTTGAAGAGATGCGGCAAAAGCTGTAGACTTCGGTGGTTGAACTATTTGAGGCCTAACATTAAGCGGGGTAACATCACTCGTGATGAAGAGGATCTCATTATTAGACTCCATAAACTCCTTGGTAACAGATGGTCTCTCATAGCTGGAAGATTACCCGGACGGACAGACAATGAAATCAAGAACTACTGGAACACTACTCTCGCAAGGAAGCTTAAACCTCCCTCATTTTCAATGTCTGAACAACAACATCCTTCCAGCGAACCAAGATCAAACAAGGAAGTAACTGAGGTCACTCCAGTTCAACCTCAACCACAGCCACAGCCCCAAGTAATTCAAACCAAGGCCAGTAGGTGCAGAAACGTGGTTATCCTACCACCCCAATATAACTCCAATGTCTACTCTCTAGCTTCAAACCAGATAAAGGATAATGAAGCTCTCCTAACCACTCATGTTACAGACCAATCTCAGGGTTCGCATACTCCAAAACCTCAAGTTAATGTAGATGAAGATCCGGTCCGTGAAAATCACAATTCAGATGTGAATTTGTGGGGTTCTGGAAGTGATTATCAGTTTCATCTAAGTGTCGCAGATTTCTGCGAAGGGGGCGTCTTTAACCTTGACAACGGCATCGACATGGATGTTCATGCCGACCAATCCGCATCCATTGACGAACTTACGGTCTATGCGTGGAACACAACTACAAGTGGTCTCGAGGTCGACAACAATGGTACGATGGATATGGATTCATTGGCCCTCCTGCTAGATTCTGGGGATTGGCCCTGA 1005 0.4677 MHVPLVVYKNKGFPQREREREKEVKERGEMGRSPCCSKEGLNRGAWTALEDKLLISYVQAHGEGKWRNLPQRAGLKRCGKSCRLRWLNYLRPNIKRGNITRDEEDLIIRLHKLLGNRWSLIAGRLPGRTDNEIKNYWNTTLARKLKPPSFSMSEQQHPSSEPRSNKEVTEVTPVQPQPQPQPQVIQTKASRCRNVVILPPQYNSNVYSLASNQIKDNEALLTTHVTDQSQGSHTPKPQVNVDEDPVRENHNSDVNLWGSGSDYQFHLSVADFCEGGVFNLDNGIDMDVHADQSASIDELTVYAWNTTTSGLEVDNNGTMDMDSLALLLDSGDWP 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g1838 334 SMART sant 42 92 IPR001005 -
Dere05g1838 334 SMART sant 95 143 IPR001005 -
Dere05g1838 334 SUPERFAMILY Homeodomain-like 41 137 IPR009057 -
Dere05g1838 334 ProSiteProfiles Myb-like domain profile. 38 90 IPR001005 -
Dere05g1838 334 MobiDBLite consensus disorder prediction 148 186 - -
Dere05g1838 334 CDD SANT 100 141 IPR001005 -
Dere05g1838 334 Pfam Myb-like DNA-binding domain 43 90 IPR001005 -
Dere05g1838 334 Pfam Myb-like DNA-binding domain 96 140 IPR001005 -
Dere05g1838 334 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 30 222 - -
Dere05g1838 334 Gene3D - 99 171 - -
Dere05g1838 334 Gene3D - 43 95 - -
Dere05g1838 334 ProSiteProfiles Myb-like domain profile. 91 141 IPR001005 -
Dere05g1838 334 MobiDBLite consensus disorder prediction 226 246 - -
Dere05g1838 334 FunFam MYB-related transcription factor 42 95 - -
Dere05g1838 334 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 38 90 IPR017930 -
Dere05g1838 334 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 91 145 IPR017930 -
Dere05g1838 334 CDD SANT 45 90 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g1838 Dere-ChrDere05 28206476 28207653 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g1838 30 145 MYB Transcription Factor Family AT2G16720 73.276 1.69e-61 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Dere05g1838 Myb_DNA-binding 1.1e-14 CL0123