Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g1837 ATGGGGAGGAGTCCATGTTGCTCCGACGAAGGACTGACCAGAGGAGCCTGGACTGCGCAAGAGGACAATTTACTCACTTCTTACATGATGACCCACGGCGAAGGTAAATGGACACACGAGCATGACATTAATTCGAAGAATCAAAATGCAGGCTTGAATAGGAGTGGCAAAAGCTGTAGGCTTAGATGGTTGAACTATCTCAGGCCAGACATCAAACGAGGTAATATCACCCAAGATGAGGAAGAACTCATCGTAAGGCTCCATAAGCTTCTTGGTAACAGATGGTCTCTCATAGCTGGAAGGTTACCCGGAAGAACAGACAATGAAATCAAGAATTATTGGAACACAACTCTGGCGAAGAAGCTTAGAACACAATCATGTGCAATGTCAGAACGACATCCAATGAGCAATTCAACAGCAAGCCTGATGTCACTGGACCACAAAACATTATATGTGGAAACAAAGTTTCAACTAAATGCAGCAGATATGTGTGCAGACTTTAACCATGAGAGCAGCATGGCCATAAATGGTCATAATGATCAGCCCCTACCTGTTGACGAAGATATGGACAGTTGCCGGATCACAAGAAGTGGCTTCGACGTCGACGATAATGTCACGTTGGATCTTGATTCATTGGCCCTCCTTCTGAAATCTGAGGATTGGTCGTGCCTTCATTTATACCTCACGTCTAATTGA 696 0.4468 MGRSPCCSDEGLTRGAWTAQEDNLLTSYMMTHGEGKWTHEHDINSKNQNAGLNRSGKSCRLRWLNYLRPDIKRGNITQDEEELIVRLHKLLGNRWSLIAGRLPGRTDNEIKNYWNTTLAKKLRTQSCAMSERHPMSNSTASLMSLDHKTLYVETKFQLNAADMCADFNHESSMAINGHNDQPLPVDEDMDSCRITRSGFDVDDNVTLDLDSLALLLKSEDWSCLHLYLTSN 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g1837 231 CDD SANT 16 67 IPR001005 -
Dere05g1837 231 Gene3D - 75 142 - -
Dere05g1837 231 SUPERFAMILY Homeodomain-like 12 114 IPR009057 -
Dere05g1837 231 Pfam Myb-like DNA-binding domain 14 67 IPR001005 -
Dere05g1837 231 Pfam Myb-like DNA-binding domain 73 117 IPR001005 -
Dere05g1837 231 Gene3D - 14 72 - -
Dere05g1837 231 ProSiteProfiles Myb-like domain profile. 9 67 IPR001005 -
Dere05g1837 231 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 68 122 IPR017930 -
Dere05g1837 231 CDD SANT 77 118 IPR001005 -
Dere05g1837 231 SMART sant 13 69 IPR001005 -
Dere05g1837 231 SMART sant 72 120 IPR001005 -
Dere05g1837 231 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 67 IPR017930 -
Dere05g1837 231 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 138 - -
Dere05g1837 231 ProSiteProfiles Myb-like domain profile. 68 118 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g1837 Dere-ChrDere05 28175598 28176640 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g1837 1 228 MYB Transcription Factor Family AT4G38620 42.017 1.94e-55 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Dere05g1837 Myb_DNA-binding 9.5e-09 CL0123