Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g1836 ATGGGGAGGAGTCCATGTTGCTCCGACGAAGAAGGACTGAAAAGAGGAGCCTGGACTGCGCAAGAGGACAAGTTACTCACTTCTTACATGATGACCCACGGCGAAAGTAAATGGACGCACGTCCCTAGAAGAGCTGGCTTGAACAGGAGTAGCAAAAGCTGTAGGCTTAGATGGTTGAACTATCTCAGGCCTGACATTAAAAGAGGCAACATCACCCCTGATGAAGAAGAACTCATTATCAGACTCCATAAGCTTCTTGGTAACAGATGGTCTCTCATAGCTGGAAGGCTACCCGGCAGAACAGACAATGAAATCAAGAATTATTGGAACACAACTCTGGCGAAGAAGCTTAGAACACGATCATGTGCAATGTCTGAACGACATCGTTTGAGCAATGCAACAGCAAGTAAGCCTGATGTCACTGGACCACAAGTAATCAAAACCAAGGCTAGTCGGAGTAAAAATGTGGTTATTCTACATCCCCCATGTCCTAAGGAAAATTCGCTAGCTTCAGACCAGATAATACAGTTTGACGAAGCTCGCCTAATTACCCAGTTCACAAATCAATCTCAGAATTCACATACTCCGGGACCTCAAGTTAATGGAGAAGAACATCATCAATTTCATGAAAATTACAGTTTAGATGTAAATTTGTTGAGTTGTGGAAACAATGAATTTCAACTAAATGCAGCAGATCTGTGTGCAGACTCTAAGCTTGAAAGAAGTATGACCGTTGGTCATGGTGACCAGTCCCTAACTGTTGACGAAGATATGGTCAATTGCTGGACCACAAGAAGTGGCTTTGAGGTCAACGACAATGCCACGTTGGATCTTGATTCATTGGCCCTTCTTTTAGAATCTGAGGATTGGTGGTGA 876 0.4372 MGRSPCCSDEEGLKRGAWTAQEDKLLTSYMMTHGESKWTHVPRRAGLNRSSKSCRLRWLNYLRPDIKRGNITPDEEELIIRLHKLLGNRWSLIAGRLPGRTDNEIKNYWNTTLAKKLRTRSCAMSERHRLSNATASKPDVTGPQVIKTKASRSKNVVILHPPCPKENSLASDQIIQFDEARLITQFTNQSQNSHTPGPQVNGEEHHQFHENYSLDVNLLSCGNNEFQLNAADLCADSKLERSMTVGHGDQSLTVDEDMVNCWTTRSGFEVNDNATLDLDSLALLLESEDWW 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g1836 291 Pfam Myb-like DNA-binding domain 68 112 IPR001005 -
Dere05g1836 291 Pfam Myb-like DNA-binding domain 15 62 IPR001005 -
Dere05g1836 291 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Dere05g1836 291 CDD SANT 72 113 IPR001005 -
Dere05g1836 291 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 62 IPR017930 -
Dere05g1836 291 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 199 - -
Dere05g1836 291 SUPERFAMILY Homeodomain-like 12 109 IPR009057 -
Dere05g1836 291 Gene3D - 8 68 - -
Dere05g1836 291 FunFam Myb transcription factor 15 67 - -
Dere05g1836 291 Gene3D - 72 139 - -
Dere05g1836 291 ProSiteProfiles Myb-like domain profile. 10 62 IPR001005 -
Dere05g1836 291 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Dere05g1836 291 SMART sant 67 115 IPR001005 -
Dere05g1836 291 SMART sant 14 64 IPR001005 -
Dere05g1836 291 CDD SANT 17 62 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g1836 Dere-ChrDere05 28166474 28167564 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g1836 1 147 MYB Transcription Factor Family AT2G16720 57.823 4.11e-56 180
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Dere05g1836 Myb_DNA-binding 1.9e-14 CL0123