Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g1835 ATGTATAGGTACCCAACTTTCGCTACCGCCATCCTCGATAGAATTGACCGTTCCATCGAGGAAGGGGAGAGGAAGAGTGGGGATGTGAACTTGTACAGAGAAAAGCCAAAAGAAATGGACAAGTTAGGAGGATTCTCATCCTCTGGCTCGGACTCCATGTGTCCCGCACCCCCGAGGCCTAAGCTGGTGAGGACTACTGTGTGGGAAGAGAAAGAGAGGGAAGTGCATAAAACATACGATTTTCATCACCATAGCACAGCAACGCAAGGCAAGTCAAAATCGTGCGCCTCAAAGATGTACAGCAACCTCAAAAATTTGAAACATCGTGGTGGGAGGCTCATGCGTTTCCTGAACTCACTGTGTACTCGTGGAAATACGAAGAAGTTGAAGAACAAGCCTTCTATGGGTGGCTTTGAAGACGTGAAGGCTGTGAGCAAAACTTATTTGTATGAACAGAAGATGATGTCTCAGTCGACAGTAGAAGAAGCTGTTCGGAAACAGTACCTCCGAAAACAGAAGTTGCCCATGATTGAAGAAGAACATGATGCGGCAAATTGTTCAAGCTCAGATCTTTTTGAGCTTGATCTTGATCACTTAATGTCCGTCAAAACAAATCCAAATGAGGTTGAGGAAGAAGAAATTTTTGAGCTTGATCTTGATCATTTAGTGTCCATCAGAACAAATCCAAATGAGGTTGAAGAAGAAGAACTTTTTGAGCTTGATCTTGATCACTTAGTGTCCATCAGAACTAATCCAAATGAGGTTGAAGAAGAACTTTTTGACCTAGAAGTACCCACTGCTAATGGCCTCATCGTAATATGGTCTCTCATAGCTGGAAGGCTACCCGGCAGAACAGACAATGAAATCAAGAATTATTGGAACACAACTCTGGCGAAGAAGCTTAGAAAACGATCATGTGCAATGTCTGAACGACATCGTTTGAGCAATCCAAGAGCAAGTAAGCCTGATGTCACTGGACCACAAGTAATCAAAACCAAGGCTAGTCGGACAGATCTGTGTGCATACTTTAAGCTTGAGAACAGTTTGGCCATAAATGGTCATGGTGATCAGTCCCAACCTGTTGACGAAGATATGGTCAATTGCTGGACCACAAGAAGTGGCTTTGAGTTCGACGATAATGCCACTTTGGATCTTGATTCATTAGCCCTCCTCCTGGAATCCGAGGATTGGTGGTGA 1197 0.4403 MYRYPTFATAILDRIDRSIEEGERKSGDVNLYREKPKEMDKLGGFSSSGSDSMCPAPPRPKLVRTTVWEEKEREVHKTYDFHHHSTATQGKSKSCASKMYSNLKNLKHRGGRLMRFLNSLCTRGNTKKLKNKPSMGGFEDVKAVSKTYLYEQKMMSQSTVEEAVRKQYLRKQKLPMIEEEHDAANCSSSDLFELDLDHLMSVKTNPNEVEEEEIFELDLDHLVSIRTNPNEVEEEELFELDLDHLVSIRTNPNEVEEELFDLEVPTANGLIVIWSLIAGRLPGRTDNEIKNYWNTTLAKKLRKRSCAMSERHRLSNPRASKPDVTGPQVIKTKASRTDLCAYFKLENSLAINGHGDQSQPVDEDMVNCWTTRSGFEFDDNATLDLDSLALLLESEDWW 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g1835 398 SUPERFAMILY Homeodomain-like 274 306 IPR009057 -
Dere05g1835 398 CDD SANT 274 297 IPR001005 -
Dere05g1835 398 Gene3D - 233 323 - -
Dere05g1835 398 ProSiteProfiles Myb-like domain profile. 256 297 IPR001005 -
Dere05g1835 398 PANTHER PROTEIN BIG GRAIN 1-LIKE A-RELATED 5 134 IPR039621 GO:0009734
Dere05g1835 398 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 274 301 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g1835 Dere-ChrDere05 28143482 28149402 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g1835 274 332 MYB Transcription Factor Family AT1G22640 54.237 5.72e-12 62.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Dere05g1835 None None None