Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g1832 ATGGGGAGGAGTCCATGTCGCTCCGAGGAACGAGATGGACTGAACAGAGGTGCCTGGACGGCGCAAGAGGACAAGTTACTTACTTCTTACATTGAAACCCACGGCGAAGGCAAATGGACACACGTCCCTAAACGAGCTGGTCTGAATAGGAGTGGCAAAAGCTGCAGGCTCAGATGGTTGAATTATCTGAGGCCTGACATTAAAAGAGGTAACATCACCCAAGATGAAGAAGAACTCATTATTAGACTCCATAAGCTTCTTGGTAACAGATGGTCTCTGATAGCTGGAAGGTTACCCGGACGAACAGACAATGAAATCAAGAACTACTGGAACACTACTTTAGCAAAGAAGCTAGTTAGAACACAATCACGTGCAAGTAAGCCTGAGGTGACACGACCGCAAGTAATCCAAACCAAGGCCAGAAAGTGCAAAAACGTGGTTATCATAGAACCCCCATGGCCTCAGGAAAAGTCCACCGTGAACTCCCCAGATTCAAATCTTATAGAGTTTGACGAAGCTCGCCTAAGTACCCAGTTCACAAATCAATCTCAGGATGACACTCCAAAAGCTCCAGTTGTCGGTGAATATCACTATTCAGATGTAAGTTTGTCTAGTCCTGATGGGAATGAATTTTATGTGAGTGAAGCAGATTTTTGCAGAGACTTTAACCTTCAGAGTGGCATGGGCATGGTCATGAATGCTCATGCTGACCAGTTCCCACCTACTGACGAACTTGTCAATTGCTGGACCACAAATGGGTTCGTGAACAATGACACTATGGATCTGGATTTGATGTCCTTCTTGCTGGATTCTAGAGATTGGCCTTAA 828 0.4541 MGRSPCRSEERDGLNRGAWTAQEDKLLTSYIETHGEGKWTHVPKRAGLNRSGKSCRLRWLNYLRPDIKRGNITQDEEELIIRLHKLLGNRWSLIAGRLPGRTDNEIKNYWNTTLAKKLVRTQSRASKPEVTRPQVIQTKARKCKNVVIIEPPWPQEKSTVNSPDSNLIEFDEARLSTQFTNQSQDDTPKAPVVGEYHYSDVSLSSPDGNEFYVSEADFCRDFNLQSGMGMVMNAHADQFPPTDELVNCWTTNGFVNNDTMDLDLMSFLLDSRDWP 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g1832 275 ProSiteProfiles Myb-like domain profile. 11 63 IPR001005 -
Dere05g1832 275 FunFam Transcription factor TT2 72 143 - -
Dere05g1832 275 FunFam Myb transcription factor 16 68 - -
Dere05g1832 275 CDD SANT 73 114 IPR001005 -
Dere05g1832 275 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 177 - -
Dere05g1832 275 Gene3D - 72 145 - -
Dere05g1832 275 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 64 118 IPR017930 -
Dere05g1832 275 ProSiteProfiles Myb-like domain profile. 64 114 IPR001005 -
Dere05g1832 275 SUPERFAMILY Homeodomain-like 14 110 IPR009057 -
Dere05g1832 275 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 11 63 IPR017930 -
Dere05g1832 275 SMART sant 15 65 IPR001005 -
Dere05g1832 275 SMART sant 68 116 IPR001005 -
Dere05g1832 275 CDD SANT 18 63 IPR001005 -
Dere05g1832 275 Pfam Myb-like DNA-binding domain 69 113 IPR001005 -
Dere05g1832 275 Pfam Myb-like DNA-binding domain 16 63 IPR001005 -
Dere05g1832 275 Gene3D - 16 68 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g1832 Dere-ChrDere05 28096602 28097629 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g1832 1 119 MYB Transcription Factor Family AT2G16720 68.908 9.56e-57 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Dere05g1832 Myb_DNA-binding 2.4e-16 CL0123