Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g1831 ATGGGGAGGAGTCCATGTTGCTTCGAGGAAGGCGAAAAGCTGAACAGAGGTGCCTGGACTGCACGAGAGGACAAGTTACTCACTTCTTACATTGAGACTCACGGCGAATGCAAATGGTCAACCCTCCCCAAAAGAGCTGGCTTGAATAGGAGCGGCAAAAGCTGTAGGCTTAGATGGTTGAACTATCTCAGGCCTGACATTAAAAGAGGTAACATCACCCATGACGAGGAAGAACTCATTGTTAGACTCCATAAGCTTCTTGGTAACAGATGGTCTCTCATAGCTGGAAGGCTACCGGGACGAACAGACAATGAAATCAAGAATTACTGGAACACAACTCTGGCAAAGAAGCTTAGAACACAATCATGTAGTGCAATGTCTGAACAACATCCAACGATGAGCAAATCAACAGCAAGTGAGCCTGACGTCATTAATCCACCACAAATAATCCGAACGAAGGCTAGTAGGTGCAGAAACGTGGTTATCCCAGATCCCCCATGTCCGAAGAAAAACTTGCTAACTTCAACCCAGATAGAGTTTGATGAAGCACACCTAACCACCCAGTTCACAAATCAATCTCGGGGTTCATATACTTCGAAAGCTCAGCTTGTATATGAACATCATCAGTTTCTCGAGAATCACTATTCAGATGTGAATAGGGATGAGTTTCAAGATCAACTAAATGCGGCAGATTTTTGCACATACTTGAACCTTGACAGCAACATGCAGGGGGACATGGATCTTCACATTGACCAATCCACACCCATAGACGGACTTATGGTCAATCGCTGGAGCACTAATGGATCAAAGGACAACAATGCCACTTTGGATCTGGATTTTACGGCCCTTCTCTTGGATTCTGGGGATTGGCCCTGA 876 0.4532 MGRSPCCFEEGEKLNRGAWTAREDKLLTSYIETHGECKWSTLPKRAGLNRSGKSCRLRWLNYLRPDIKRGNITHDEEELIVRLHKLLGNRWSLIAGRLPGRTDNEIKNYWNTTLAKKLRTQSCSAMSEQHPTMSKSTASEPDVINPPQIIRTKASRCRNVVIPDPPCPKKNLLTSTQIEFDEAHLTTQFTNQSRGSYTSKAQLVYEHHQFLENHYSDVNRDEFQDQLNAADFCTYLNLDSNMQGDMDLHIDQSTPIDGLMVNRWSTNGSKDNNATLDLDFTALLLDSGDWP 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g1831 291 Gene3D - 9 68 - -
Dere05g1831 291 SMART sant 15 65 IPR001005 -
Dere05g1831 291 SMART sant 68 116 IPR001005 -
Dere05g1831 291 ProSiteProfiles Myb-like domain profile. 64 114 IPR001005 -
Dere05g1831 291 FunFam Transcription factor TT2 72 141 - -
Dere05g1831 291 Gene3D - 72 142 - -
Dere05g1831 291 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 11 63 IPR017930 -
Dere05g1831 291 Pfam Myb-like DNA-binding domain 16 63 IPR001005 -
Dere05g1831 291 Pfam Myb-like DNA-binding domain 69 113 IPR001005 -
Dere05g1831 291 CDD SANT 73 114 IPR001005 -
Dere05g1831 291 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 187 - -
Dere05g1831 291 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 64 118 IPR017930 -
Dere05g1831 291 FunFam MYB-related transcription factor 15 68 - -
Dere05g1831 291 CDD SANT 18 63 IPR001005 -
Dere05g1831 291 SUPERFAMILY Homeodomain-like 14 110 IPR009057 -
Dere05g1831 291 ProSiteProfiles Myb-like domain profile. 11 63 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g1831 Dere-ChrDere05 28064885 28065967 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g1831 1 122 MYB Transcription Factor Family AT2G16720 68.852 6.00e-58 185
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Dere05g1831 Myb_DNA-binding 4.7e-14 CL0123