Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g1830 ATGGGGAGGAGTCCATGTCGCTTTGAGGAAGGCGAAGTGCTCAACAGAGGAGCCTGGACTGCGCAAGAGGACAAGTTACTCTCTTCTGACGTTGAGGCCCACGGCGAAGGCAAATGGACACTGGTCCCCAAAAGAGCTGGCTTGAATAGGAGCGGCAAAAGCTGTAGGCTTAGATGGTTGAACTATCTCAGGCCTGATATCAAACGAGGCAACATCACCCCCGATGAAGAAGAACTCATTATTAGACTCCATAAGCTTCTTGGTAACAGATGGTCTCTGATAGCTGGAAGGCTACCAGGGCGAACAGACAATGAAATCAAGAATTACTGGAACACAACTCTGGCAAAAAGGCTTAGAACACAATTATGTGCAATGTCTGAACAACATCCAACGATGAGCAAATCAACAGCAAATGAGCCTGACGTCACTCGACCACAAGTAATCCATACCAAGGCTTGTAGGTGCAAAAACGTGGTTCTCGGAGATCCCCAATGTCCTAAGGAAAACTTGCGAACTTCGAACCAGATAGAGTTTCTTGAAGCACCCCTAACCACCCAGTTCACAAATCAATCTCGGGATTCATATACGTCAGAAGCTCAACCTGTAGATGAATATCCTCAGTTTCACGAGAATCACAATTCAGATGTGAACATGAATGAGTTTCAAGATCAACTGAACGTAGCAGATTTTTGCACGAACTGTAACGTTGACAGCAACATGCCCGGGGACATAGATCTTGACGTTGACCAATCCAGAACCATTGATGACATCATGGTCAATTGCTGGACCACTAGCGGATCAGACGGCAAAAATGCGACTATGGATCTGGATTTTAGGGCCCTCCTCTGGGATTCTGGGGATTGGTTCTGA 870 0.4655 MGRSPCRFEEGEVLNRGAWTAQEDKLLSSDVEAHGEGKWTLVPKRAGLNRSGKSCRLRWLNYLRPDIKRGNITPDEEELIIRLHKLLGNRWSLIAGRLPGRTDNEIKNYWNTTLAKRLRTQLCAMSEQHPTMSKSTANEPDVTRPQVIHTKACRCKNVVLGDPQCPKENLRTSNQIEFLEAPLTTQFTNQSRDSYTSEAQPVDEYPQFHENHNSDVNMNEFQDQLNVADFCTNCNVDSNMPGDIDLDVDQSRTIDDIMVNCWTTSGSDGKNATMDLDFRALLWDSGDWF 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g1830 289 SMART sant 15 65 IPR001005 -
Dere05g1830 289 SMART sant 68 116 IPR001005 -
Dere05g1830 289 FunFam Myb transcription factor 16 68 - -
Dere05g1830 289 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 199 - -
Dere05g1830 289 CDD SANT 73 114 IPR001005 -
Dere05g1830 289 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 64 118 IPR017930 -
Dere05g1830 289 Pfam Myb-like DNA-binding domain 69 113 IPR001005 -
Dere05g1830 289 Pfam Myb-like DNA-binding domain 16 63 IPR001005 -
Dere05g1830 289 ProSiteProfiles Myb-like domain profile. 64 114 IPR001005 -
Dere05g1830 289 ProSiteProfiles Myb-like domain profile. 11 63 IPR001005 -
Dere05g1830 289 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 11 63 IPR017930 -
Dere05g1830 289 SUPERFAMILY Homeodomain-like 15 110 IPR009057 -
Dere05g1830 289 CDD SANT 18 63 IPR001005 -
Dere05g1830 289 Gene3D - 73 143 - -
Dere05g1830 289 Gene3D - 16 68 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g1830 Dere-ChrDere05 28059464 28060517 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g1830 1 121 MYB Transcription Factor Family AT2G16720 66.116 6.65e-53 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Dere05g1830 Myb_DNA-binding 2e-15 CL0123