Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g1829 ATGGGTTGGGGTCACCTGGGAAGAAATAGGCACTCCAACTCGGATGACGCGGGAACCAGCGGGGAAGCAGGTCCCTCCGCCACCACTACAGCCACCGACCAATCCGTACCACGGCGGTTCCCCCTGGCGGCTCAGCCTGAGATCATGAGAGCAGCTGAGAAGGACGACCAGTATGCCTCTTTTGTGTACGAAGCCTGTCGCGACGCCTTCCGCCACCTCTTTGGCACTAGAGTTGCAGTTACCTACCAAAGTGAGGTGAGCACTCTCATCTTCATATCTTTTGTTCTTGCTGTCTCAACAAAACTTTTGGGACAGATGCTTTACTATGTGCTGACAACAGGCTCAGGGCAACAGACGCTAGGAGAAGAATACTGTGACATCACTCAGGTTGGAGGACCTTACGGACTTCCTCCTACTCCTGCAAGGCGTGCTCTTTTCATTGTATACCAGACAGCTGTTCCATATATTGCAGAACGAATTAGTTCTAGAATTGCTTCCCGTGGACTTGTCCTTGCTGATTCGCAATCTGCTGAGATCTATGGCATTAGGAGCAGTGAAGTTCAAGCTTCTGCCATGAGTGTACTTCCCTCTTCTTCCACATCAGGGCAATCTGTTACAACTCTGACAAGGTTGACAGAGAAACTGAGGGTAGTTTGGTTGCAAGTAGTTCAGAGATGGCCTACGATGCTTCCAATGGTTGGTGAGTTGTTGCAACTGGTTCTTCGTGCTAATCTCATGTTCTTCTATTTCGAAGGTCTCTATTATCATATATCAAAACGAGCTGCAGGTATTCGTTATGTCTTCATTGGAAAAGCATCAAATCAAAGACCCAGATACCAAATTCTTGGTGTATTTCTATTGATTCAACTTTGTATAATTGCCGCTGAAGGGCTGCGTAGAAGCAATTTATCTTCATTTGCAAGTTCTGCTCACCAGGCATCCCTTGGGACCCACCAGAGATCAGCAGGACGAGGTTTGCCTGTTTTAGATGAAGAAGGTATTCTGGCATCATCAGATACTGACAGGGGAAATTGGTTGTCTGACTCTTCACAATCTGAGTCCCAAGCAATTAGTGGAGTAAGCAAATGCACACTCTGCCTGAGTAATCGGCAACACCCAACAGCTACTTCCTGTGGCCATGTATTTTGCTGGAATTGTATAACGGAATGGTGCAACGAAAAGCCAGAATGCCCTCTTTGCCGCACCCCCCTAACACACTCAAGTCTGGTTTGTTTGTATCATTCAGACTTCTAG 1254 0.4737 MGWGHLGRNRHSNSDDAGTSGEAGPSATTTATDQSVPRRFPLAAQPEIMRAAEKDDQYASFVYEACRDAFRHLFGTRVAVTYQSEVSTLIFISFVLAVSTKLLGQMLYYVLTTGSGQQTLGEEYCDITQVGGPYGLPPTPARRALFIVYQTAVPYIAERISSRIASRGLVLADSQSAEIYGIRSSEVQASAMSVLPSSSTSGQSVTTLTRLTEKLRVVWLQVVQRWPTMLPMVGELLQLVLRANLMFFYFEGLYYHISKRAAGIRYVFIGKASNQRPRYQILGVFLLIQLCIIAAEGLRRSNLSSFASSAHQASLGTHQRSAGRGLPVLDEEGILASSDTDRGNWLSDSSQSESQAISGVSKCTLCLSNRQHPTATSCGHVFCWNCITEWCNEKPECPLCRTPLTHSSLVCLYHSDF 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g1829 417 ProSiteProfiles Zinc finger RING-type profile. 363 401 IPR001841 -
Dere05g1829 417 MobiDBLite consensus disorder prediction 1 37 - -
Dere05g1829 417 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 340 414 IPR013083 -
Dere05g1829 417 ProSitePatterns Zinc finger RING-type signature. 378 387 IPR017907 -
Dere05g1829 417 Pfam Ring finger domain 362 401 IPR001841 -
Dere05g1829 417 SUPERFAMILY RING/U-box 362 406 - -
Dere05g1829 417 FunFam Peroxisome biogenesis factor 10 338 414 - -
Dere05g1829 417 CDD RING-HC_PEX10 361 412 - -
Dere05g1829 417 PANTHER PEROXISOME ASSEMBLY PROTEIN 10 41 415 IPR025654 GO:0005778|GO:0007031|GO:0008270|GO:0016558
Dere05g1829 417 SMART ring_2 363 400 IPR001841 -
Dere05g1829 417 Pfam Pex2 / Pex12 amino terminal region 55 300 IPR006845 -
Dere05g1829 417 MobiDBLite consensus disorder prediction 13 36 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g1829 Dere-ChrDere05 28041507 28045364 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g1829 358 413 C3H Transcription Factor Family AT4G27470 37.879 1.09e-09 57.0