Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g1826 ATGCAAGTCACCGCCTCTGTCGCTTCCACTCCCCCTTGTCCCCCGGTCCGAACTGCTTTCTTATCCTGGCCTCCATTTTCACTGTGCGTAGGATTCTTGATGGATTCTACCCATCAAGCTTCGAAAGGGGGCGAAATAGGCCTGACGGAGAAGAAAGCAGCTAACGGAGACGAGGTGGCGGTGACTATTTCGGGCCACCAGAATCCAAATGCTACTGGAGAGTGCCAAGGCTTCAAAGAGACTGAATCTAACAAGTCCACCGAATTCATTACTGGGCATGTCTCATCAAAGTCGCCACCTTTAAATCGTGATTCCCCTGAGATAAGGTTCAATTATAGCCCAAATAAGTCTCCAGAAGTTTCTGCTACAAACCGAAACCTTACCCACAAAAAGTCTCTACCAAGGTCAATGTATTCTAAGCCCAAGTCAAGATTTGGGGAGCAACCTTATCCTGTTGATGCAGCTGTATTAGAAGATAATAACAATTCCACCTTGCAAGAACAGTTTGCATTTAGTTCGCCCTATATGAAATCGTTTAATAAACCATCACCTAATAACAAATCCACCACAGTTAAGAGGACTGTGTCCATAACTTCCATCACTCCTAAAACACCATTGATAGCGTCTCCAGGGCCAGCTGGAGAGGATGAGGATGAAATAATTTTCAAGAAAGTGGAACTGAGTAAAAGTAAACGTAAGACAGTGACAATTAAGGTCGTGATGGAGTGGATTGTGTTTGTGTGCATTACAGGGTGCCTTGTTACTAGCCTGACAGTTGAAAAATTGAAAAACATAATGATATGGGGTTTGGGGTTTTGGAAGTGGTGTGTTCTTGTGATGGTTATCTTTTGTGGCATGTTAGTTACCAAATGGTTCATGCACATAGTAGTTTTCTTGATTGAAATGAACTTTTTGTTGAGGAGAAAGGTTTTATATTTTGTTCATGGACTAAAGAAAAGTGTTCAGGTCTTTATTTGGCTGGGCGTGGTTCTTATCACTTGGGTTCTGTTAATCAATCGCGGGGTCCAGCGATCAGAACTTGCGACAAAAATTTTGAATGGTGTAACTTGGACTCTTGTTTCTCTTCTCATTGCTGCATTCTTATGGTTGCTAAAGACGTTCTTGCTAAAAATATTAGCTACAAATTTCCACGTCAAGTCTTTCTTCGATAGAATTCAAGAATCAATCTTCCATCAATATGTTCTGCAAACTCTCTCTGGGCCTCCATTAATAGAGGAGGCTGAGAAGGTTGGTAGATCACCAAGTATTGGCCAATTCAGTTTTAGGAGTACAAAAGGTAAAAAAGGCACAACGAAAGAGGTTATTGATATGGCAAAGCTTCAAAGGATGAAACAAGAGAAAGTTTCTGCTTGGACAATGAAAATTTTGGTTGACGCTGTGACAAATTCAAGGCTGTCCACAATCTCTAATGTACTAGATGAGAGTTTTGATGATGGAGGACTAGAACAAACTGATAAAGAGATAACAAATGAGATGGAAGCAATTGCTGCTGCCTATCACATTTTCCGGAATGTCGCTGCCCCTTGTTGCTTGTACATAGATGAGGATGACCTCCTGAGGTTCATGATTAAGGAAGAAGTGGATTTGGTGTTTCCCCTATTTGAAGGATCAGAGACTGGACGAATTGACAGAAAAGCTTTGACAAACTGGGTGGTGAAGGTCTATCAGGAACGCAAAGCTTTGGCACATGCCTTAAGTGACACCAAGACTGCTGTAAAGCAATTGAACACGCTTGTGACAGGGATCTTGGTAATTGTTTCCATAATTGTGTGGCTTCTACTAATGGAGATTGCAACGACAAAAGTACTTGTGCTCCTCTCATCGCAACTAGTACTTGCTGCATTCATCTTTGGAAACACATGCAAGAATATATTTGAGGCTCTCATATTTGTGTTTGTAATGCATCCATTTGATGTTGGTGATCGATGTGTCATTGATGGAGTTCAGCTATTGGTTGAAGAAATGAACATTTTGACAACAGTATTCTTAAAGCTTGATAATGAGAAAGTGTGCTATCCAAACTCAGTTCTGGCCACAAAACCCATTAGCAATTATTACCGAAGCCCAAATATGGGTGACACTATAGAGTTTTCAATTGACTTTATGACACCAGTGGCTGTGATTGGAGCACTGAAGGAAAAAATAAAGAGGTATTTGGACGGACATCCTCAGCACTGGCATCCTAATCACAACGTAGTAGTGAAGGAGATCGAAAATGTGAATAAGATTAAAATAGCTCTCTATGTTAACCACACAATGAATTTTCAAAACTTTGGTGAGAAGAACAAGCGAAGAACTGAACTGGTGATGGAACTAAAGAAAATATTTGAAGAGCTCAATATTAGATACAATCTTCTTCCTCAGGCAATTCATCTCAGCCATGTTGGATCAAATACAAGCATACTCAAGGGATAA 2436 0.4068 MQVTASVASTPPCPPVRTAFLSWPPFSLCVGFLMDSTHQASKGGEIGLTEKKAANGDEVAVTISGHQNPNATGECQGFKETESNKSTEFITGHVSSKSPPLNRDSPEIRFNYSPNKSPEVSATNRNLTHKKSLPRSMYSKPKSRFGEQPYPVDAAVLEDNNNSTLQEQFAFSSPYMKSFNKPSPNNKSTTVKRTVSITSITPKTPLIASPGPAGEDEDEIIFKKVELSKSKRKTVTIKVVMEWIVFVCITGCLVTSLTVEKLKNIMIWGLGFWKWCVLVMVIFCGMLVTKWFMHIVVFLIEMNFLLRRKVLYFVHGLKKSVQVFIWLGVVLITWVLLINRGVQRSELATKILNGVTWTLVSLLIAAFLWLLKTFLLKILATNFHVKSFFDRIQESIFHQYVLQTLSGPPLIEEAEKVGRSPSIGQFSFRSTKGKKGTTKEVIDMAKLQRMKQEKVSAWTMKILVDAVTNSRLSTISNVLDESFDDGGLEQTDKEITNEMEAIAAAYHIFRNVAAPCCLYIDEDDLLRFMIKEEVDLVFPLFEGSETGRIDRKALTNWVVKVYQERKALAHALSDTKTAVKQLNTLVTGILVIVSIIVWLLLMEIATTKVLVLLSSQLVLAAFIFGNTCKNIFEALIFVFVMHPFDVGDRCVIDGVQLLVEEMNILTTVFLKLDNEKVCYPNSVLATKPISNYYRSPNMGDTIEFSIDFMTPVAVIGALKEKIKRYLDGHPQHWHPNHNVVVKEIENVNKIKIALYVNHTMNFQNFGEKNKRRTELVMELKKIFEELNIRYNLLPQAIHLSHVGSNTSILKG 811
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g1826 811 PIRSF Memb_At2g17000 35 809 IPR016688 -
Dere05g1826 811 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 48 802 IPR016688 -
Dere05g1826 811 FunFam Predicted mechanosensitive ion channel 643 692 - -
Dere05g1826 811 Pfam Mechanosensitive ion channel 585 789 IPR006685 GO:0016020|GO:0055085
Dere05g1826 811 Gene3D - 643 692 IPR023408 -
Dere05g1826 811 SUPERFAMILY Sm-like ribonucleoproteins 633 692 IPR010920 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g1826 Dere-ChrDere05 28010734 28014524 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g1826 80 800 Mechanosensitive Ion Channel Family AT5G12080 60.660 0.0 865