Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g1825 ATGAGCAGGAATTACAGAGACAGCCCTGAAAATTCTGTGAGTGTGGCCTCACCATACCTATCTCGGCAATCATCCAATTCGAACAGTAAGCCGAAACACGTGGTGGAGGCACCAAGCCCTGTTCCTCGTGGATGCTGCCGAGGTTTAGGTAATGTCAAGACCTCGGGACCAACTATTTCAGCCATGCAACACCAGGAGCACCTCCAACATTCTAAGAGATTGGAAGTAAAGGTGGCAGATTTGGAGAAGGAAGTCCAGAGGCAGACAGAACTGCGACTCATGTACCGGAAAAGGATGGAAAGAACACAGGACTATCTGAAGTTCTGCCTCCAAATAGCTCAAGAGAATGGGATACTGGATCTCATTGTCCACCACAAAGGCGAACTCCAACAATCTCCATTGTCAGCGAGCACCCCCAACCTCAATGGCAGTCCTCAAATTCCCACTCCACTCCACCACCACCACCACCGCCCAGATCTTGCAGCCATCATCGATCAAGCCAAAGTCAACGGATGGTACATCGATCCAACTGAGATTGAATTGCAAGAGAAGATAGGGCAGGGAAGCACGGCGGACATATACAGCGCAACGTGGCGGGGATATGGTGTGGCGGTGAAGTGCATATCTGCGGAATTTTTCCAAACAAACGACAACGGTGTCATATTCTTTGCTCAAGAGATAGAGACACTGTCGAAGCAGAGGCACCGGTTCGTGCTTCAGCTGATGGGGGCGTGCCTGGACCCTCCCCACCACGCCTGGGTGGTCACCGAGTATCTCAGCACCACGCTTAGGGATTGGCTTCACGGCCCCGGCAAGAGACGCAGACACAGACAAATCCCACTTCCTTCCCTGCAACACAGGGTGGTGAGGGCTCTGGAGATTTCTCAGGCAATGCAGTATCTCCACGAGCAGAAGCCCAAGGTCATCCACAGAGACCTCAAGCCCAGCAACATTTTCCTGGACGACGCCTTGCACGTCAGAATCGCCGACTTCGGTCACGCCCGCTTCTTGGGCGACCAGGAAATGGCCCTCACCGGTGAAACAGGGACGTACGTGTACATGGCACCAGAGGTGATACGATGCGAGCCTTATAATGAAAAATGTGATGTCTACAGTTTCGGGGTCATACTCAACGAGCTTCTTACAGGGAATCACCCTTACATCGAGACTGACTACGGTCCTACCAAGATTGCTACGGAAGTTGTGGAGGATAAGTTGAGGCCTATGCTTCCAGAGGACACGGACAGTGAACTAGAGGAGCTCATTGAACTTATCGGCCTTTGTTGGGATGGGAATCCATCTAAACGACCGTCGTTCGCAACAATCACTGGTGCACTCAAAACCTTAAACAAGCCGTCTTTTAATTAG 1368 0.5161 MSRNYRDSPENSVSVASPYLSRQSSNSNSKPKHVVEAPSPVPRGCCRGLGNVKTSGPTISAMQHQEHLQHSKRLEVKVADLEKEVQRQTELRLMYRKRMERTQDYLKFCLQIAQENGILDLIVHHKGELQQSPLSASTPNLNGSPQIPTPLHHHHHRPDLAAIIDQAKVNGWYIDPTEIELQEKIGQGSTADIYSATWRGYGVAVKCISAEFFQTNDNGVIFFAQEIETLSKQRHRFVLQLMGACLDPPHHAWVVTEYLSTTLRDWLHGPGKRRRHRQIPLPSLQHRVVRALEISQAMQYLHEQKPKVIHRDLKPSNIFLDDALHVRIADFGHARFLGDQEMALTGETGTYVYMAPEVIRCEPYNEKCDVYSFGVILNELLTGNHPYIETDYGPTKIATEVVEDKLRPMLPEDTDSELEELIELIGLCWDGNPSKRPSFATITGALKTLNKPSFN 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g1825 455 ProSitePatterns Protein kinases ATP-binding region signature. 185 206 IPR017441 GO:0005524
Dere05g1825 455 ProSitePatterns Serine/Threonine protein kinases active-site signature. 308 320 IPR008271 GO:0004672|GO:0006468
Dere05g1825 455 ProSiteProfiles Protein kinase domain profile. 179 454 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere05g1825 455 MobiDBLite consensus disorder prediction 1 33 - -
Dere05g1825 455 Coils Coil 64 91 - -
Dere05g1825 455 MobiDBLite consensus disorder prediction 133 147 - -
Dere05g1825 455 CDD STKc_MAP3K-like 185 443 - -
Dere05g1825 455 MobiDBLite consensus disorder prediction 1 41 - -
Dere05g1825 455 MobiDBLite consensus disorder prediction 133 155 - -
Dere05g1825 455 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 69 449 - -
Dere05g1825 455 Pfam Protein kinase domain 180 442 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere05g1825 455 SUPERFAMILY Protein kinase-like (PK-like) 150 443 IPR011009 -
Dere05g1825 455 Gene3D Transferase(Phosphotransferase) domain 1 260 452 - -
Dere05g1825 455 SMART serkin_6 179 454 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere05g1825 455 Gene3D Phosphorylase Kinase; domain 1 167 259 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g1825 Dere-ChrDere05 27984425 27986661 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g1825 172 449 MAP Kinase Kinase Kinase AT4G35780 36.559 4.37e-50 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-8 Dere05g1825 Pkinase 1.3e-48 CL0016