Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g1822 ATGGCGGACCCGAGATCTATTGTTCCGTATCATGATCCGTACGGTTTCCCACTACCCCAGAACATCCTCGATTTCGCGAATGATCTTAATCCCACCCTCGCAGATATATCCAATGAGCACTACTCTGTTTTACAGGGTAATAATCTGAATTCGGGACAAAGGATTCAAGATACCACCATGCATGATTTTTCCCATGCAGGAGGCAACTTAGAATCAGGACCATCTGAACTTCAAGGGGAAAATCATCCGGGTTCACAGAATTTCACTGAAGTGGTTCAACTTTCATTCTGGCCAGAACCACCAGTTCCTTTTATTTGCAGTAACTGTCAAGTTCTCAGAGAAATAATTCATACTAATGGGATTAAGTTTACAAAACTAGAGATTCATGGAAGACTCGGTATGATCTGTCATGCGATTCATCAACAGAATACTAATGTGGGTTCTTCTGGCGATCATCAAATTCACATGTTTGATTTTTGCAACAGAAGCTTACAAGAAATCAAGAATTTTCTAACGCAGTACTGCGTGGATCAAAACGCAGCAGGGTACTTCGTAGTGCAAGATCCGCTGTCAGCCTATTATGAAGCCCTCTGCATAGGAATGGACTGGAATGACGACCTAACTGATGAATTCGTTGATTTGAACCCTGACAATTCTGAGGGAACATCTGATGAGGCAGAGGACATGGATAGGAATCCTAGGACTTGCCTTGCAGCACAGAGGGAGAGAGCGGGGAGGATGACGTTGAGTGATTTAAGGGACTTCTTTCATCTACCTATTGAAGATGCAGCAAAGGAAGTAAACTTGTGCCCTACAGTTTTGAAGAAAATTTGCCGTAAAGAAGGATTAGCCAGATGGCCTCATCGAAAGATAAAGAGCATAACGAAGAAAATAAATATATTGAGAGGGACTTTGAATTCGGAAGATACAGTGTCAAGGGCACAAACAATGGGAGAAATTGAGAGACTTCATCAAGAAATGATTCAACATTGTGGTGGAATTGCCCCAACTTCACTAAATTTTGATGCTTGA 1032 0.4196 MADPRSIVPYHDPYGFPLPQNILDFANDLNPTLADISNEHYSVLQGNNLNSGQRIQDTTMHDFSHAGGNLESGPSELQGENHPGSQNFTEVVQLSFWPEPPVPFICSNCQVLREIIHTNGIKFTKLEIHGRLGMICHAIHQQNTNVGSSGDHQIHMFDFCNRSLQEIKNFLTQYCVDQNAAGYFVVQDPLSAYYEALCIGMDWNDDLTDEFVDLNPDNSEGTSDEAEDMDRNPRTCLAAQRERAGRMTLSDLRDFFHLPIEDAAKEVNLCPTVLKKICRKEGLARWPHRKIKSITKKINILRGTLNSEDTVSRAQTMGEIERLHQEMIQHCGGIAPTSLNFDA 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g1822 343 Pfam RWP-RK domain 247 294 IPR003035 -
Dere05g1822 343 PANTHER PROTEIN RKD4 64 329 IPR044607 GO:0003700
Dere05g1822 343 ProSiteProfiles RWP-RK domain profile. 234 314 IPR003035 -
Dere05g1822 343 MobiDBLite consensus disorder prediction 62 82 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g1822 Dere-ChrDere05 27953460 27955049 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g1822 240 312 NLP Transcription Factor Family AT1G76350 40.541 1.15e-12 67.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Dere05g1822 RWP-RK 6.5e-22 No_clan