Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g1821 ATGTGGTTTGCGGACTCCATGGCCTTTTATCAAATCCGGTTAATATATTCAATTCTGTCCGATTCAGATCCGCTTAAACCTACGCCCTCTCTTTCTCTCTCCTTCTCCACTCACAGGTCAAATACTTTTCCATCTTTCCCTCCATTTACAGGCACACTCGGTCCCGGCTCGTACCTCCAATTTGAGCTCGACATGGACGGAGGTGCTCCGTACAATCCTCGTACGGTCGAGGAGGTCTTCAGGGATTTCAAGGGTCGCCGAGCTGGCATGATTAAGGCCCTCACTACCGATGTTGAAGAGTTCTATCAGCAGTGTGATCCAGAGAAGGAAAACCTTTGCCTTTATGGATTCCCTAGTGAGCAGTGGGAAGTCAATCTGCCTGCTGAGGAGGTGCCTCCAGAGCTTCCAGAACCAGCATTGGGTATTAACTTTGCCAGAGATGGGATGCAAGAAAAAGACTGGCTATCTTTGGTTGCTGTGCACAGTGATGCATGGTTACTTGCTGTAGCCTTTTATTTTGGTGCTAGATTTGGATTTGATAAGGCTGATAGGAAGCGATTGTTTAATATGATAAATGATCTTCCAACAATATTTGAGGTTGTTACAGGGATGGCCAAGAAACAAGGAAAGGAGAAGTCATCAGTTTCTAATCATAGCAGTAACAAATCCAAATCAAACTCCAAAAGAGGCTCTGAATCTCAGGGAAAGTATTCAAAGGCAATGCAACCAAAGGATGAAGATGAGGAGGGTTTGGATGAGGAAGATGAGGAGGAGCATGGGGAGACACTGTGCGGGGCATGTGGAGAGAACTATGCAGCGGATGAGTTCTGGATTTGCTGTGACATCTGTGAGAAGTGGTTTCACGGAAAGTGTGTGAAGATCACCCCTGCAAGGGCAGAGCATATCAAGCAGTATAAATGTCCGTCCTGTAGCAACAAGAGAGCTCGACCTTGA 954 0.4644 MWFADSMAFYQIRLIYSILSDSDPLKPTPSLSLSFSTHRSNTFPSFPPFTGTLGPGSYLQFELDMDGGAPYNPRTVEEVFRDFKGRRAGMIKALTTDVEEFYQQCDPEKENLCLYGFPSEQWEVNLPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDAWLLAVAFYFGARFGFDKADRKRLFNMINDLPTIFEVVTGMAKKQGKEKSSVSNHSSNKSKSNSKRGSESQGKYSKAMQPKDEDEEGLDEEDEEEHGETLCGACGENYAADEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSNKRARP 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g1821 317 PANTHER CPG BINDING PROTEIN 72 316 IPR045104 GO:0006355|GO:0042393
Dere05g1821 317 Pfam Alfin 75 203 IPR021998 GO:0006355|GO:0042393
Dere05g1821 317 MobiDBLite consensus disorder prediction 208 256 - -
Dere05g1821 317 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 254 312 IPR013083 -
Dere05g1821 317 CDD PHD_AL_plant 263 313 IPR044104 -
Dere05g1821 317 SUPERFAMILY FYVE/PHD zinc finger 253 314 IPR011011 -
Dere05g1821 317 MobiDBLite consensus disorder prediction 214 238 - -
Dere05g1821 317 ProSitePatterns Zinc finger PHD-type signature. 264 310 IPR019786 -
Dere05g1821 317 Pfam PHD-finger 264 313 IPR019787 -
Dere05g1821 317 SMART PHD_3 263 311 IPR001965 -
Dere05g1821 317 ProSiteProfiles Zinc finger PHD-type profile. 261 313 IPR019787 -
Dere05g1821 317 FunFam PHD finger alfin-like protein 256 312 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g1821 Dere-ChrDere05 27948995 27952702 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g1821 65 316 Alfin-like Transcription Factor Family AT3G42790 79.447 1.68e-130 370
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Dere05g1821 Alfin 8.5e-70 No_clan