LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dere05g1816	ATGGAAGACAGTAGTTCAAAAGCACCAGAGTTACCAGACAGCGATCCTTTTGAGATCTCTGAGTTCTTCAAGTTCGATGATCAAGAATGGCAAGATGATGATCTCAATCAGTCATTAGTTTCAGGACAAGTCCCAAACCAGCAGGTCTATCAAACCAATGAAGTAAGTGGACTTGGACAAAGCAGTGCCAACCCCTTTCAGGGGTCTTCAAGCAGAGACATTAGCATTAGTACTGGTAGTGGGGAGAAGAGGGACGTTAAAAAGAGATTTGCATTCAAAACAAAGTCAGAAGTTGAGATAATGGATGATGGGTACAGGTGGAGGAAGTACGGGAAGAAGATGGTGAAGAACAGCCCCAACCCCAGGAATTACTATAGGTGTTCAGTAGACAGATGCCCGGTAAAAAAAAGAGTTGAGAGAGATGGGGATGATCCGAGCTATGTAATAACAACCTACGAAGGCATTCACACCCACCCAAGTTTTTCCTGA	489	0.4397	MEDSSSKAPELPDSDPFEISEFFKFDDQEWQDDDLNQSLVSGQVPNQQVYQTNEVSGLGQSSANPFQGSSSRDISISTGSGEKRDVKKRFAFKTKSEVEIMDDGYRWRKYGKKMVKNSPNPRNYYRCSVDRCPVKKRVERDGDDPSYVITTYEGIHTHPSFS	162

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dere05g1816	162	Pfam	WRKY DNA -binding domain	102	159	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Dere05g1816	162	SUPERFAMILY	WRKY DNA-binding domain	94	160	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Dere05g1816	162	MobiDBLite	consensus disorder prediction	40	83	-	-
	Dere05g1816	162	Gene3D	WRKY domain	88	154	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Dere05g1816	162	ProSiteProfiles	WRKY domain profile.	96	161	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Dere05g1816	162	MobiDBLite	consensus disorder prediction	40	77	-	-
	Dere05g1816	162	PANTHER	WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED	58	159	IPR044810	GO:0003700
	Dere05g1816	162	SMART	WRKY_cls	101	160	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Dere05g1816	162	FunFam	WRKY transcription factor 57	87	161	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dere05g1816	Dere-ChrDere05	27930415	27931340	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dere05g1816	15	161	WRKY Transcription Factor Family	AT5G26170	52.795	9.11e-46	146

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	WRKY	Dere05g1816		WRKY	6.3e-25	CL0274