Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g1792 ATGATGAAAGGTTTGGTGGTGGACGAAAACATGTCCAATTTGACATCTGCATCTAGTGAAATAAGTGCTTCTTCGGGAACTAGAAATGACCCTACCGTCTCTCTCTACCCTCAGCACTCCTCCACTTCAGGAAATCAAGAACCACAACCCAAAAAGAAGAGAAACCTTCCTGGCAACCCAGACCCAGACGCCGAAGTTATAGCCTTGTCTCCCAAGTCCCTCTTGGCAACAAACCGATTCATTTGCGAAATATGCAACAAAGGGTTTCAAAGAGATCAAAATCTCCAGCTTCATAGAAGAGGGCACAATCTGCCATGGAAGCTGAAGCAAAGAAGCAACAAGGACATCATTAGAAAGAAGGTATATGTGTGCCCAGAGGCAACTTGTGTTCACCATGATCCCTCAAGAGCCCTCGGAGACCTCACCGGGATCAAGAAGCACTTCTGCAGGAAGCACGGCGAGAAAAAATGGAAGTGTGAGAAATGCTCCAAGCGTTACGCTGTTCAGTCCGATTGGAAGGCTCACTCCAAAATTTGTGGCACCAAGGAGTACAAATGTGACTGTGGAACCCTCTTCTCTAGAAGGGACAGTTTCATCACTCACAGAGCCTTCTGTGATGCTTTAGCACAGGAGAGTGCCAGAGCAATCACAGCAGTGAGCCCTCTTCTTCATAGCCATCCCCTCCAAGCACCACTACCACTTCTCAAAAAAGAACAAGACTTTCCACCATGGTTGGGAGAATCTGGAACTGCAGGAAGCACTCTTAGGCCTTTCTCCTCATCACATTTAGACCAATCCTTAAATCTAATCCATCACCATCAAAACCCTAATCCCACACCTCCTCTTCCTTCTTTCCAATCATCCCCACCTTCTTACATGTCAGCCACTGCTTTGTTGCAGAAAGCATCACAAATAGGTCACATGCCTCAACCTGATCAACAGGGTACAACAATGCCTCATTCATCATCATCTTCAGTTGTTTCTGGTATGGGTATGCCTTTGCCTTCACGTGACCAAATGGGGTTGGCTCATGCCTTGGCTTCTTATGGGAATAAAGCTGCTGGGTTCTCCTCTGATTACATGGAACATGGTGCTACTGCTGCCAATTGCAACACAGCATCTCCACCTACTACTTCTCTTTTCCATGACATGATGCCTACTTCTACAGTGCCTTCCGCTGGTGGGTTTGAGAGATCTTCCTTTGAGGAGGCTTTGAGAGGAATGTTCAATCCAGCAAGAGACACTGCTAGCGAGGAAATGACCCGAGATTTTCTGGGTCTCAAGGCATTTTCTCAGAGAGATTTTTTCAATATATCGGGGTTCGATCATCTGGCTTCTTCGTCGTATGGTAAGCAAAATCACAACCAAACACCATGGCAAGGTTAA 1386 0.4639 MMKGLVVDENMSNLTSASSEISASSGTRNDPTVSLYPQHSSTSGNQEPQPKKKRNLPGNPDPDAEVIALSPKSLLATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLKQRSNKDIIRKKVYVCPEATCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKRYAVQSDWKAHSKICGTKEYKCDCGTLFSRRDSFITHRAFCDALAQESARAITAVSPLLHSHPLQAPLPLLKKEQDFPPWLGESGTAGSTLRPFSSSHLDQSLNLIHHHQNPNPTPPLPSFQSSPPSYMSATALLQKASQIGHMPQPDQQGTTMPHSSSSSVVSGMGMPLPSRDQMGLAHALASYGNKAAGFSSDYMEHGATAANCNTASPPTTSLFHDMMPTSTVPSAGGFERSSFEEALRGMFNPARDTASEEMTRDFLGLKAFSQRDFFNISGFDHLASSSYGKQNHNQTPWQG 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g1792 461 MobiDBLite consensus disorder prediction 270 291 - -
Dere05g1792 461 SUPERFAMILY beta-beta-alpha zinc fingers 79 177 IPR036236 -
Dere05g1792 461 Gene3D Classic Zinc Finger 135 215 - -
Dere05g1792 461 ProSiteProfiles Zinc finger C2H2 type domain profile. 80 102 IPR013087 -
Dere05g1792 461 SMART c2h2final6 122 152 IPR013087 -
Dere05g1792 461 SMART c2h2final6 80 102 IPR013087 -
Dere05g1792 461 SMART c2h2final6 157 177 IPR013087 -
Dere05g1792 461 FunFam protein indeterminate-domain 5, chloroplastic-like 135 214 - -
Dere05g1792 461 MobiDBLite consensus disorder prediction 16 65 - -
Dere05g1792 461 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 37 434 IPR031140 -
Dere05g1792 461 Pfam Zinc-finger double-stranded RNA-binding 80 102 IPR022755 -
Dere05g1792 461 MobiDBLite consensus disorder prediction 16 52 - -
Dere05g1792 461 MobiDBLite consensus disorder prediction 307 329 - -
Dere05g1792 461 FunFam protein indeterminate-domain 12-like 59 128 - -
Dere05g1792 461 Gene3D Classic Zinc Finger 61 131 - -
Dere05g1792 461 ProSitePatterns Zinc finger C2H2 type domain signature. 82 102 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g1792 Dere-ChrDere05 27696431 27698277 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g1792 7 306 IDZ Gene Family AT1G55110 58.529 3.77e-120 357
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Dere05g1792 zf-C2H2_jaz 6.6e-05 CL0361