Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g1788 ATGGAGGAGGAAAAGAGGGGAAGGAAGAAGAGAGCCTGCGCTGTATGCATACATCGACGCCAAAAATGCACTGAAGATTGCATTTTGGCACCCTATTTCCCTGCCGATCGAGAGGAATGTTTCAAGAACGTCTTGAGATGCTACACCGTCTCCAAGCTCACCAAGTTACTCGCAGCAGTGGAGCCATCACTCCGACGCAACGTCGCCCACTCCATCATATATGAAACAGCCATGCGAGCCCTCTTCCCTCGGCATGGCTGTCTCACAGTAATCTGGCCTCTTCAAGAGCAGGTTATACAGTGCCAGGCTCAGCTTCTCTCCGTGCGTGATCGTCTTCGCCAGATCCGACGTCAACACCAACAACAAGAAGAACAGCTTCCAATGGGGTCAGATAATGGTTTGCAGGCTCTGGTCTTCCCTGAACAACAAGTACAGGGTCACAATGTTGATCATCACAATGAATCTCGTTCCCAGCTTCAAGTTCCACAGTTTCACATGCAACCCCAACGACAGAATCCCCATCATAATCTTGAGTTGGGTCATCAGTCTTGTGATATTCTTGATCAACAAGAAGGTCAGAATCAGAGTAACGATCCCCTGCCTTCTGCTTCTGGTTCTGAGTCAGCTCAAATTCAAACTGAAGGCTCATCGTCATCGGACCCGATTTGTGGTACTGCAACACCCAATTCCTCGTCTTTCTCTGCACCTTTAACCTCTTCTTGA 723 0.4896 MEEEKRGRKKRACAVCIHRRQKCTEDCILAPYFPADREECFKNVLRCYTVSKLTKLLAAVEPSLRRNVAHSIIYETAMRALFPRHGCLTVIWPLQEQVIQCQAQLLSVRDRLRQIRRQHQQQEEQLPMGSDNGLQALVFPEQQVQGHNVDHHNESRSQLQVPQFHMQPQRQNPHHNLELGHQSCDILDQQEGQNQSNDPLPSASGSESAQIQTEGSSSSDPICGTATPNSSSFSAPLTSS 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g1788 240 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 11 158 - -
Dere05g1788 240 Coils Coil 105 125 - -
Dere05g1788 240 MobiDBLite consensus disorder prediction 191 240 - -
Dere05g1788 240 Pfam Lateral organ boundaries (LOB) domain 12 108 IPR004883 -
Dere05g1788 240 ProSiteProfiles LOB domain profile. 11 112 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g1788 Dere-ChrDere05 27674004 27674726 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g1788 11 137 AS2 family AT3G13850 34.615 7.86e-21 86.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Dere05g1788 LOB 1e-26 No_clan