Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g1781 ATGGATGATCGAAGCAACGCGTATGTCTATAAAGTGGAGGAGGAAGAAAGCAAAAGCGAGTACGGGTCTGCAAAATGGATGTCCTCGAAGATGAGGTTGATGCGAAAAATGATGACCCCCAGTACTTCTCCTGTTAACGTCCCACATTATGTATCCAATACTACTCCAACATACAAAACCCTAGAGCACCAGAAAACCCAAAGAAGCCCTCCTAGCCACAGAAATAGCACCATCACTAGGGTTTGCGCAGACTGTAACACAACCAGCACCCCACTTTGGAGGGGTGGCCCTAAGGGTCCCAAGTCACTATGCAATGCGTGTGGAATAAGGCAGAGGAAGGCTAGAAGGGCAATGGCAGAAGCTGCAAATGGTGGAGTGATCAGTTCCAGAGGGCATAACAAGGAGAAGAAGCCTCGCACAAACCATTTCGTACAATTCAAGAATAAGTGTAAGGGCACTAGTAGTGGAGGCACATCTCAGACAGAAAAGAAGAATATTGGTTTCAAGGATTTTACATTTAGTTTGATGAAGAATTCGGTGGTTGAGAAGGAGTTTCCGCGAGATGAAGTAGCTGAGGCAGCGCTGCTTCTTATGGATTTGTCTTGTGCCTTTGTTCCCTTTTAG 624 0.4615 MDDRSNAYVYKVEEEESKSEYGSAKWMSSKMRLMRKMMTPSTSPVNVPHYVSNTTPTYKTLEHQKTQRSPPSHRNSTITRVCADCNTTSTPLWRGGPKGPKSLCNACGIRQRKARRAMAEAANGGVISSRGHNKEKKPRTNHFVQFKNKCKGTSSGGTSQTEKKNIGFKDFTFSLMKNSVVEKEFPRDEVAEAALLLMDLSCAFVPF 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g1781 207 PANTHER GATA TRANSCRIPTION FACTOR 22-RELATED 17 205 - -
Dere05g1781 207 ProSitePatterns GATA-type zinc finger domain. 82 107 IPR000679 GO:0006355|GO:0043565
Dere05g1781 207 SMART GATA_3 76 127 IPR000679 GO:0006355|GO:0043565
Dere05g1781 207 Pfam GATA zinc finger 82 115 IPR000679 GO:0006355|GO:0043565
Dere05g1781 207 CDD ZnF_GATA 81 118 IPR000679 GO:0006355|GO:0043565
Dere05g1781 207 Gene3D - 76 142 IPR013088 GO:0006355|GO:0008270
Dere05g1781 207 ProSiteProfiles GATA-type zinc finger domain profile. 76 130 IPR000679 GO:0006355|GO:0043565
Dere05g1781 207 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 75 122 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g1781 Dere-ChrDere05 27601162 27601902 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g1781 22 205 C2C2-Gata Transcription Factor Family AT4G26150 37.500 3.15e-26 101
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Dere05g1781 GATA 3.8e-16 CL0167