Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g1771 ATGGAGAATGATATATTCGGTGCTCCAATGAGCATGGCTGGCCGAAGTTCAGCTGTCATAGATGAAATTTCACAAACACCAAACCCGCTCATTCAGTGCTATTCATATGACCTTAAGGACCAAACACGCATCATGAATGGAATTCCAATGCTTGCTGGAGGGCAAGGTGAACTCATAAGTAATGTGCATTCAGATGTTCCTCTAATGAATCCAGCCTGCATTGCAGATTCTAATCCCATGGTTTCATCACAAGGAAAGAACATTGTCGGAGATGCCTCACTTGGTACGCCATGTCCCCTAGACAACAATGAGTTTCAAGATCAACTAGCTGGAGGAACCACGATCACTCCTGCTTCAGTTGCTGCCCTTCTTGCTGCAAGATTTGGGCTTCAAGAAAACTTGGAGAAATCAGCAGCTTCGTCTCCTTCAATCTGTTCATTGGAGGCACTAGCACCATATATGTTAAGTAATTGGCAGGATACTTCAAACCCTTTGCTTCCAACTTTCGGTGATCGTGGGTACGATGAAGTACCTGGTACTAGGTTCCAGACATATTCATCCACAGCAAACTTGGATCCAAATGGATGGACATCATCAAATGCTGCAAACTTGACCCATCATACTTATGACTGCCCGAATTTTAGCAATGAGCTCTCATTAAGTCTAGCAACATCTCCCACCACAGGTCAGTGCTCGGAGGCGAGTTCTGAAGGCTTAGAACAAGCCTCCTGCAGCAGTAGAGGGGTTTCTAGGAGTTTGGGTTCCAATAGACATGTGAATTTTTCACAGGCAATATTGGGGTCCAGATATCTTACTGGGATTCAAGATATACTTGCTCAAATTGCAAGGTATTCGCTTGAAAATATAGAACAGATAAATTGTTTAGCTGCTGGTACTAGAGCCAGAGCAGAAGGAAATATATCAACCTCAGCCCTCCAACCCGGGAGGATGATAGCGACAAATCACAATGAAGACTCTATATTTGATGCTTATGGGGATTCTTCATTTGGAGGACATGATGCAGCTGGATCAAAGAAATCCCAACTTCTGACACTTCTACAATTGGTGGATAGTCGATATAATCAGTGTTTGGATGAGATACATACTGTTGTATCCGCATTTCATGCTGCTACAGAGTTGGACCCGCACGTTCATGCACATTTTGCCCTTCAAACAGTCTCTTTGTTATACAAGGATTTGCGAGAGAGGATTAGCAATTATATTCTTGCCATGGGAGCAAATTTCAACGACTCACGCTCAGAAGAAGAGAAGGAAAGGTCTACGGAAGCTTCATTCATCGAAAAGCAATGGGCTCTGCAGCAGTTGAAAAGAAAAGAGCATCAATTATGGAGGCCCCAAAGGGGCTTGCCAGAACGATCTGTCTCAGTTCTACGGGCTTGGATGTTTCAGAATTTCCTCCATCCTTATCCTAAAGATGCAGAGAAGCAATTACTTGCAGTGAAAAGTGGATTGACCAGAAGCCAGGTATCCAACTGGTTTATAAATGCTCGTGTAAGGCTATGGAAGCCTTTGATCGAGGAAATGTATGCTGAAATGAACAAAAGAAAGGCACTTCGGAATGGAGAAGGAACGGAGAGCAGTCATAGAAACAGCAGGACAAGCATGAGTGGTCAAAGATTTAATATCAACTGA 1653 0.435 MENDIFGAPMSMAGRSSAVIDEISQTPNPLIQCYSYDLKDQTRIMNGIPMLAGGQGELISNVHSDVPLMNPACIADSNPMVSSQGKNIVGDASLGTPCPLDNNEFQDQLAGGTTITPASVAALLAARFGLQENLEKSAASSPSICSLEALAPYMLSNWQDTSNPLLPTFGDRGYDEVPGTRFQTYSSTANLDPNGWTSSNAANLTHHTYDCPNFSNELSLSLATSPTTGQCSEASSEGLEQASCSSRGVSRSLGSNRHVNFSQAILGSRYLTGIQDILAQIARYSLENIEQINCLAAGTRARAEGNISTSALQPGRMIATNHNEDSIFDAYGDSSFGGHDAAGSKKSQLLTLLQLVDSRYNQCLDEIHTVVSAFHAATELDPHVHAHFALQTVSLLYKDLRERISNYILAMGANFNDSRSEEEKERSTEASFIEKQWALQQLKRKEHQLWRPQRGLPERSVSVLRAWMFQNFLHPYPKDAEKQLLAVKSGLTRSQVSNWFINARVRLWKPLIEEMYAEMNKRKALRNGEGTESSHRNSRTSMSGQRFNIN 550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g1771 550 ProSiteProfiles 'Homeobox' domain profile. 447 510 IPR001356 GO:0003677
Dere05g1771 550 Pfam Homeobox KN domain 467 506 IPR008422 GO:0003677|GO:0006355
Dere05g1771 550 MobiDBLite consensus disorder prediction 524 550 - -
Dere05g1771 550 MobiDBLite consensus disorder prediction 534 550 - -
Dere05g1771 550 SMART HOX_1 450 514 IPR001356 GO:0003677
Dere05g1771 550 Pfam Associated with HOX 265 405 IPR006563 -
Dere05g1771 550 SMART prehox3 259 406 IPR006563 -
Dere05g1771 550 SUPERFAMILY Homeodomain-like 452 519 IPR009057 -
Dere05g1771 550 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 203 533 - -
Dere05g1771 550 CDD homeodomain 450 510 IPR001356 GO:0003677
Dere05g1771 550 Gene3D - 453 532 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g1771 Dere-ChrDere05 27509524 27511504 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g1771 216 523 Homeobox Transcription Factor Family AT4G32980 55.911 1.25e-105 323
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Dere05g1771 POX 8.8e-24 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere05g1771 05 27509524 27511504 Dere05g1771 05 27509524 27511504 ECH