Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g1754 ATGGGAAGAGCTCCTTGCTGTGACAAAGCCAATGTTAAGAGAGGCCCATGGTCTCCCGAAGAAGACGCTACTCTCAAGACTTATGTCGAGGCTCATGGCACTGGTGGCAATTGGATTGCATTACCCAGAAAAGCTGGCCTTCGGAGGTGTGGTAAGAGTTGCCGTCTACGGTGGCTCAACTATCTTAGGCCAGACATCAAACATGGAGGCTTTACTGAAGAAGAGGACAACGTCATTTGTACCCTTTATGGTCAAATGGGAAGCAGATGGTCTACCATAGCCTCTCAGCTTCCGGGTAGAACTGACAATGATGTGAAAAACTACTGGAACACCAAGTTAAAGAAGAAGCTAATGGCAGGAAAAGTGAACCTCAAAACGATGACCAACAGTGGCTCTCTTCCTTCGACCCCGTTACGAACCCGTATTGTTCAAACTCAAACTCAAAATTCAGATTTTCCTGCCTCGCAAAACCAGAATTCTTCACTCTCAACTCTGCCCATCCTGACCAATGCTAATTCTGGGTTTAACATTAACGCTCAGACCATGAGTCTTGACCCAACTCAATTATATAGTCCAGGGTTCATGGAAAGTTCAGGGAACAGTCATATGATGTCCTCGTCTCAGGAAGGTCCAAGCATTTCAGGTTCATCTGTGATTGCAATGGATAACAAGTGTATATCGCTGCTGGATTATGCTGGTGACGAAGCTACCAAAGTCTTAATGGACTTCGGATTTGAATCTCCTTGTGACCTTGTCAATGGCCTTTACTCCCCTGAGAAAGCTGGTGAATTCGCTCCAAGTTACTATCCTGAGTTGGTTGATTTTAGCTATGCTGACATGAAGCTTCAAGGACTGAATCAAAATGTTACTTAG 873 0.4502 MGRAPCCDKANVKRGPWSPEEDATLKTYVEAHGTGGNWIALPRKAGLRRCGKSCRLRWLNYLRPDIKHGGFTEEEDNVICTLYGQMGSRWSTIASQLPGRTDNDVKNYWNTKLKKKLMAGKVNLKTMTNSGSLPSTPLRTRIVQTQTQNSDFPASQNQNSSLSTLPILTNANSGFNINAQTMSLDPTQLYSPGFMESSGNSHMMSSSQEGPSISGSSVIAMDNKCISLLDYAGDEATKVLMDFGFESPCDLVNGLYSPEKAGEFAPSYYPELVDFSYADMKLQGLNQNVT 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g1754 290 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Dere05g1754 290 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Dere05g1754 290 CDD SANT 71 113 IPR001005 -
Dere05g1754 290 SMART sant 67 115 IPR001005 -
Dere05g1754 290 SMART sant 13 64 IPR001005 -
Dere05g1754 290 FunFam Transcription factor RAX3 7 68 - -
Dere05g1754 290 PANTHER OS09G0431300 PROTEIN 1 213 - -
Dere05g1754 290 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Dere05g1754 290 Gene3D - 7 68 - -
Dere05g1754 290 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Dere05g1754 290 FunFam Transcription factor RAX3 70 159 - -
Dere05g1754 290 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Dere05g1754 290 CDD SANT 16 62 IPR001005 -
Dere05g1754 290 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Dere05g1754 290 Gene3D - 70 134 - -
Dere05g1754 290 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g1754 Dere-ChrDere05 27308624 27310203 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g1754 1 118 MYB Transcription Factor Family AT3G49690 81.356 3.89e-74 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Dere05g1754 Myb_DNA-binding 3.1e-13 CL0123