Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g1753 ATGATGATCGGAGATCAAAGGCCTTTCGTCTCGAACCTTCAAATTACTCATTCGAATCCATCTGACAGTTCAACGATAGCATTACCATCTCCATTACCCATTGATGCTTTAACGATCGACTTCAATGGCAATGCCGGTGGTTACGACTATCCACCTTCCAACGACTCCTCCACCCCCCTCCACCCTTTTCTTTCCAATGATTTCTCCCCCACTGATTTGGACTCACTCTGCGAAGATTTCGACGCGTCTTTTGATTCTTTTTCCAGTGATCATTTCCGCATCTTCGAGTTTAAGATCCGCCAATGCGCACGCGCTAGGTCACATGACTGGACTCAGTGTCCGTACGCCCACCCCGGCGAGAAGGCTCGCCGGAGAGACCCTCGGAGGTATCACTACTCCGGCACCGCATGCCCCGAGTTTCGCAAAGGCAATTGCAAGAAAGGTGACTCGTGCGAGTTTGCTCACGGAGTTTTCGAATGCTGGCTTCACCCCTCTCGTTACAGGACCCAGTTCTGCAAGGACGGGACAAATTGTCGCCGCCGAGTGTGCTTCTTCGCTCACAATCCGGATCAATTGCGGTTCCTTGCTAACGGCACCGGCGATGGGTCGGACGGATCGCCGATTTCTCACGCTCCCTTTGTCTCTTCGCCTACATCTGTTCTCACCTCGTCGCCGATCTCTTCTCTGTCTGAGTCCCCACCCACGTCGCCGGGAAATCCCCGACACGGCTTGAGTGAAATCGCCTCCTTAATGCGTAATGTTCAAATCGATAAGTCGCCTCCAACTCGCGTTTCCCATATGCGTTGTGTGTTCGGTTCACCTCGTGGCATCCAAATGGGTTCGGTGTTTGGTTCGCCCCGTGGTTCGAATCTCCGACCTGGGTTTTTTAGCCTCCCTTCAACTCCGACTGGGGCCTTGGCGAAATCTGGGCTTAGTCCTCTGGACCTGTGGGATCAGAGCCATCATGAAGAACCTGCTATGGAGAGGGTCGAATCGGGAAGAGAACTTAGAGCCAAAATCTACGCTAAGCTCAGTAAGGAGAACACTTTGGGGCAAAGCAATGCAGGGCTTTCTGGAATGTTCTGA 1086 0.5267 MMIGDQRPFVSNLQITHSNPSDSSTIALPSPLPIDALTIDFNGNAGGYDYPPSNDSSTPLHPFLSNDFSPTDLDSLCEDFDASFDSFSSDHFRIFEFKIRQCARARSHDWTQCPYAHPGEKARRRDPRRYHYSGTACPEFRKGNCKKGDSCEFAHGVFECWLHPSRYRTQFCKDGTNCRRRVCFFAHNPDQLRFLANGTGDGSDGSPISHAPFVSSPTSVLTSSPISSLSESPPTSPGNPRHGLSEIASLMRNVQIDKSPPTRVSHMRCVFGSPRGIQMGSVFGSPRGSNLRPGFFSLPSTPTGALAKSGLSPLDLWDQSHHEEPAMERVESGRELRAKIYAKLSKENTLGQSNAGLSGMF 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g1753 361 Gene3D - 131 194 - -
Dere05g1753 361 FunFam Zinc finger CCCH domain-containing protein 66 89 157 - -
Dere05g1753 361 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 136 156 IPR000571 GO:0046872
Dere05g1753 361 MobiDBLite consensus disorder prediction 196 244 - -
Dere05g1753 361 ProSiteProfiles Zinc finger C3H1-type profile. 132 158 IPR000571 GO:0046872
Dere05g1753 361 SMART c3hfinal6 166 189 IPR000571 GO:0046872
Dere05g1753 361 SMART c3hfinal6 131 157 IPR000571 GO:0046872
Dere05g1753 361 PANTHER UNKEMPT FAMILY MEMBER 57 354 IPR045234 -
Dere05g1753 361 MobiDBLite consensus disorder prediction 209 239 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g1753 Dere-ChrDere05 27276890 27277975 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g1753 87 202 C2H2 Transcription Factor Family AT5G12850 66.379 8.19e-56 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Dere05g1753 zf-CCCH 4.8e-06 CL0537