Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Dere05g1750 | ATGGAGGAATATAATAATAATCTGAGCGAAAACGCAGGTGGAAGGGCTAATTTCTTGTCCTCTTCGAGTGGTATTGGGTACGGAAGAAGTAGCGGCGGTGGTTCAAGCGTTGCTCATCACCTGCCTATCAGTGCCTTTCATCTTCAGTCCGGTGCCTCTGACTGCTTTCATCACTCCGATCAACCACATCCCACTGTGAAAACCGAAGCCAACACCTCCCACCAAACTCAGATTTTTCAATACCCTCTTATGAGAGGGAATCTTCACCCCGCGATGCACCACCAAGGAGGAGGCGGAGACACCTCCAACGAAGTTGAGGCTATCAAAGCTAAGATCATCGCTCATCCTCAGTACTCCAATCTTTTACAAGCTTACATGGATTGCCAAAAGGTGGGAGCTCCACCGGAAGTGGTGGCGCGTCTGGCTGCTGCTCGCCAGGAGTTTGAGGCACGGCAGCGATCTTCATCGACATCCAGGGAAGTTTCCAAGGACCCTGAACTTGACCAATTCATGGAAGCCTACTATGACATGCTTGTGAAGTATCGAGAGGAATTGACAAGGCCTATACAAGAAGCCATGGATTTCATGCGCAGGATTGAAGCTCAACTCAATATGCTTTGCAATGGACCCGTCCGTATCTTTTCTGATGACAAGTGTGAAGGGGTTGGTTCATCTGAAGATGATCAAGAGAATAGTGGTGGAGAAACAGAATTGCCGGAGATTGATCCCAGAGCTGAGGACCGTGAACTTAAGAACCACTTACTGAGGAAGTATAGTGGCTACTTAAGCAGCCTTAAGCAAGAACTCTCAAAGAAAAAGAAGAAGGGAAAACTACCCAAAGATGCTAGGCAAAAGCTACTGAGCTGGTGGGAATTACATTACAAATGGCCCTATCCCTCGGAATCAGAGAAGGTGGCATTGGCTGAATCAACTGGATTGGACCAAAAGCAAATAAATAACTGGTTCATAAATCAAAGGAAGAGGCACTGGAAGCCATCTGAAGACATGCAATTTATGGTGATGGATGGACTTCACCCACAGAATGCAACTCTCTATATGGATGGTCACTACATGCCAGATGGTCACTACCGTCTAGGTCCATGA | 1104 | 0.471 | MEEYNNNLSENAGGRANFLSSSSGIGYGRSSGGGSSVAHHLPISAFHLQSGASDCFHHSDQPHPTVKTEANTSHQTQIFQYPLMRGNLHPAMHHQGGGGDTSNEVEAIKAKIIAHPQYSNLLQAYMDCQKVGAPPEVVARLAAARQEFEARQRSSSTSREVSKDPELDQFMEAYYDMLVKYREELTRPIQEAMDFMRRIEAQLNMLCNGPVRIFSDDKCEGVGSSEDDQENSGGETELPEIDPRAEDRELKNHLLRKYSGYLSSLKQELSKKKKKGKLPKDARQKLLSWWELHYKWPYPSESEKVALAESTGLDQKQINNWFINQRKRHWKPSEDMQFMVMDGLHPQNATLYMDGHYMPDGHYRLGP | 367 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Dere05g1750 | 367 | ProSiteProfiles | ELK domain profile. | 249 | 269 | IPR005539 | GO:0003677 | |
Dere05g1750 | 367 | Gene3D | - | 274 | 336 | - | - | |
Dere05g1750 | 367 | SUPERFAMILY | Homeodomain-like | 270 | 344 | IPR009057 | - | |
Dere05g1750 | 367 | ProSitePatterns | 'Homeobox' domain signature. | 307 | 330 | IPR017970 | GO:0000981|GO:0006355 | |
Dere05g1750 | 367 | SMART | KNOX1_2 | 106 | 150 | IPR005540 | GO:0003677|GO:0005634 | |
Dere05g1750 | 367 | ProSiteProfiles | 'Homeobox' domain profile. | 269 | 332 | IPR001356 | GO:0003677 | |
Dere05g1750 | 367 | SMART | ELK_2 | 249 | 270 | IPR005539 | GO:0003677 | |
Dere05g1750 | 367 | Pfam | Homeobox KN domain | 289 | 328 | IPR008422 | GO:0003677|GO:0006355 | |
Dere05g1750 | 367 | SMART | KNOX2_2 | 157 | 208 | IPR005541 | GO:0003677|GO:0005634 | |
Dere05g1750 | 367 | PANTHER | HOMEOBOX PROTEIN TRANSCRIPTION FACTORS | 80 | 339 | - | - | |
Dere05g1750 | 367 | FunFam | Homeobox protein knotted-1-like 2 | 274 | 336 | - | - | |
Dere05g1750 | 367 | CDD | homeodomain | 281 | 333 | IPR001356 | GO:0003677 | |
Dere05g1750 | 367 | SMART | HOX_1 | 271 | 336 | IPR001356 | GO:0003677 | |
Dere05g1750 | 367 | Pfam | KNOX1 domain | 107 | 149 | IPR005540 | GO:0003677|GO:0005634 | |
Dere05g1750 | 367 | Pfam | KNOX2 domain | 161 | 207 | IPR005541 | GO:0003677|GO:0005634 | |
Dere05g1750 | 367 | Pfam | ELK domain | 249 | 270 | IPR005539 | GO:0003677 | |
Dere05g1750 | 367 | MobiDBLite | consensus disorder prediction | 218 | 246 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Dere05g1750 | Dere-ChrDere05 | 27244594 | 27247503 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Dere05g1750 | 48 | 367 | Homeobox Transcription Factor Family | AT4G08150 | 70.909 | 3.63e-155 | 440 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | HB-KNOX | Dere05g1750 | KNOX2 | 2.4e-25 | No_clan |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Dere05g1750 | 05 | 27244594 | 27247503 | Dere05g1750 | 05 | 27244594 | 27247503 | ECH |