Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g1750 ATGGAGGAATATAATAATAATCTGAGCGAAAACGCAGGTGGAAGGGCTAATTTCTTGTCCTCTTCGAGTGGTATTGGGTACGGAAGAAGTAGCGGCGGTGGTTCAAGCGTTGCTCATCACCTGCCTATCAGTGCCTTTCATCTTCAGTCCGGTGCCTCTGACTGCTTTCATCACTCCGATCAACCACATCCCACTGTGAAAACCGAAGCCAACACCTCCCACCAAACTCAGATTTTTCAATACCCTCTTATGAGAGGGAATCTTCACCCCGCGATGCACCACCAAGGAGGAGGCGGAGACACCTCCAACGAAGTTGAGGCTATCAAAGCTAAGATCATCGCTCATCCTCAGTACTCCAATCTTTTACAAGCTTACATGGATTGCCAAAAGGTGGGAGCTCCACCGGAAGTGGTGGCGCGTCTGGCTGCTGCTCGCCAGGAGTTTGAGGCACGGCAGCGATCTTCATCGACATCCAGGGAAGTTTCCAAGGACCCTGAACTTGACCAATTCATGGAAGCCTACTATGACATGCTTGTGAAGTATCGAGAGGAATTGACAAGGCCTATACAAGAAGCCATGGATTTCATGCGCAGGATTGAAGCTCAACTCAATATGCTTTGCAATGGACCCGTCCGTATCTTTTCTGATGACAAGTGTGAAGGGGTTGGTTCATCTGAAGATGATCAAGAGAATAGTGGTGGAGAAACAGAATTGCCGGAGATTGATCCCAGAGCTGAGGACCGTGAACTTAAGAACCACTTACTGAGGAAGTATAGTGGCTACTTAAGCAGCCTTAAGCAAGAACTCTCAAAGAAAAAGAAGAAGGGAAAACTACCCAAAGATGCTAGGCAAAAGCTACTGAGCTGGTGGGAATTACATTACAAATGGCCCTATCCCTCGGAATCAGAGAAGGTGGCATTGGCTGAATCAACTGGATTGGACCAAAAGCAAATAAATAACTGGTTCATAAATCAAAGGAAGAGGCACTGGAAGCCATCTGAAGACATGCAATTTATGGTGATGGATGGACTTCACCCACAGAATGCAACTCTCTATATGGATGGTCACTACATGCCAGATGGTCACTACCGTCTAGGTCCATGA 1104 0.471 MEEYNNNLSENAGGRANFLSSSSGIGYGRSSGGGSSVAHHLPISAFHLQSGASDCFHHSDQPHPTVKTEANTSHQTQIFQYPLMRGNLHPAMHHQGGGGDTSNEVEAIKAKIIAHPQYSNLLQAYMDCQKVGAPPEVVARLAAARQEFEARQRSSSTSREVSKDPELDQFMEAYYDMLVKYREELTRPIQEAMDFMRRIEAQLNMLCNGPVRIFSDDKCEGVGSSEDDQENSGGETELPEIDPRAEDRELKNHLLRKYSGYLSSLKQELSKKKKKGKLPKDARQKLLSWWELHYKWPYPSESEKVALAESTGLDQKQINNWFINQRKRHWKPSEDMQFMVMDGLHPQNATLYMDGHYMPDGHYRLGP 367
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Dere05g1750 367 ProSiteProfiles ELK domain profile. 249 269 IPR005539 GO:0003677
Dere05g1750 367 Gene3D - 274 336 - -
Dere05g1750 367 SUPERFAMILY Homeodomain-like 270 344 IPR009057 -
Dere05g1750 367 ProSitePatterns 'Homeobox' domain signature. 307 330 IPR017970 GO:0000981|GO:0006355
Dere05g1750 367 SMART KNOX1_2 106 150 IPR005540 GO:0003677|GO:0005634
Dere05g1750 367 ProSiteProfiles 'Homeobox' domain profile. 269 332 IPR001356 GO:0003677
Dere05g1750 367 SMART ELK_2 249 270 IPR005539 GO:0003677
Dere05g1750 367 Pfam Homeobox KN domain 289 328 IPR008422 GO:0003677|GO:0006355
Dere05g1750 367 SMART KNOX2_2 157 208 IPR005541 GO:0003677|GO:0005634
Dere05g1750 367 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 80 339 - -
Dere05g1750 367 FunFam Homeobox protein knotted-1-like 2 274 336 - -
Dere05g1750 367 CDD homeodomain 281 333 IPR001356 GO:0003677
Dere05g1750 367 SMART HOX_1 271 336 IPR001356 GO:0003677
Dere05g1750 367 Pfam KNOX1 domain 107 149 IPR005540 GO:0003677|GO:0005634
Dere05g1750 367 Pfam KNOX2 domain 161 207 IPR005541 GO:0003677|GO:0005634
Dere05g1750 367 Pfam ELK domain 249 270 IPR005539 GO:0003677
Dere05g1750 367 MobiDBLite consensus disorder prediction 218 246 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Dere05g1750 Dere-ChrDere05 27244594 27247503 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g1750 48 367 Homeobox Transcription Factor Family AT4G08150 70.909 3.63e-155 440
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Dere05g1750 KNOX2 2.4e-25 No_clan
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere05g1750 05 27244594 27247503 Dere05g1750 05 27244594 27247503 ECH