Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g1749 ATGAATCCCATGGTGAATAGTGACAGAGAAGGAACTAGATGCCCAAGAGGGACAGCGAATAACAATGCAGAAAAAGGGAAGGGGTATAGTAAAATGATTTGGTACAAGATGGTAATCAAGAGAGTAGAGAAGAGAGATTCAAAACCAATAATCGGGGCTCTATTGAAAAAGCAGACAAAGTTACAAGTTAGTGGCTTTGTTGACATGGACGGTTGTTTCACAGCCGTTGCTTCAGAAACAATGGGTTTTTCTGACATCTGTAACACAGGCCTTGGACTGGGTCTTGGTCTTGGCCTTCATGATCAATCTGAGAATTGTCACAGAGAAAGCCAACAGAAGAAAGAGGAGGATCCATTAAAATGTAACAAGGTATACCCATCTCTTACATTAGGACCTCCCGATCATCATCAAGAGGCTAATCAACAGCTACCTGTAAAGACTGAATCTGCTAATTTCCATGCAATAACCTCTTCTCCCAGCGCAGCCTCTTCGTTTTCCAACTCCTCTAGCATCAAGAGGGAGAGAGAGCTTATGGGTGAAGAGTTTGATTTGGAAGTAGAGAAGGCTAATCCTTCCAAGCTTGGCTTCGACGTAGATGAAGATGGTAATTCCAGGAAGAAACTTAGGCTCACCAAAGAACAATCTGCCGTCTTAGAGGACAGCTTCAAAGAGCACTCTACTCTCAACCCAAAGCAAAAGCAAGAACTGGCAAGGAAGTTAAACCTGCGGGCCAGACAAGTGGAAGTGTGGTTTCAAAACAGGAGAGCAAGGACAAAACTGAAACAAACAGAAGTGGACTGTGAATTACTCAAGAAGTGCTGCGAAACCCTGACGGAAGAAAACAAGAGACTGCAAAAGGAGCTGCAGGAGCTGAGATCAATGAAAACGACGCCGCAGGGGCCCTTCTATATGCAGCTTCCGGCAGCCACCCTCACCATATGCCCTTCTTGCGAGAGAATTTGCGCCGGCGGAGGAGGCGGCGCCACCACCAATGGCTCTTCCGCCACCACGGCCTTCCTTATTGGATCAAAGGCCCATCACTTGTACAAAAGTAGCTATCCATTCACCCACTCATCCGCAGCCTGCTAG 1089 0.4646 MNPMVNSDREGTRCPRGTANNNAEKGKGYSKMIWYKMVIKRVEKRDSKPIIGALLKKQTKLQVSGFVDMDGCFTAVASETMGFSDICNTGLGLGLGLGLHDQSENCHRESQQKKEEDPLKCNKVYPSLTLGPPDHHQEANQQLPVKTESANFHAITSSPSAASSFSNSSSIKRERELMGEEFDLEVEKANPSKLGFDVDEDGNSRKKLRLTKEQSAVLEDSFKEHSTLNPKQKQELARKLNLRARQVEVWFQNRRARTKLKQTEVDCELLKKCCETLTEENKRLQKELQELRSMKTTPQGPFYMQLPAATLTICPSCERICAGGGGGATTNGSSATTAFLIGSKAHHLYKSSYPFTHSSAAC 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g1749 362 ProSiteProfiles 'Homeobox' domain profile. 201 261 IPR001356 GO:0003677
Dere05g1749 362 ProSitePatterns 'Homeobox' domain signature. 236 259 IPR017970 GO:0000981|GO:0006355
Dere05g1749 362 SMART halz 261 306 IPR003106 GO:0006355|GO:0043565
Dere05g1749 362 FunFam Homeobox-leucine zipper protein 18 194 266 - -
Dere05g1749 362 Coils Coil 267 297 - -
Dere05g1749 362 Pfam Homeobox associated leucine zipper 261 295 IPR003106 GO:0006355|GO:0043565
Dere05g1749 362 CDD homeodomain 205 262 IPR001356 GO:0003677
Dere05g1749 362 SMART HOX_1 203 265 IPR001356 GO:0003677
Dere05g1749 362 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 92 333 - -
Dere05g1749 362 SUPERFAMILY Homeodomain-like 202 269 IPR009057 -
Dere05g1749 362 Pfam Homeodomain 205 259 IPR001356 GO:0003677
Dere05g1749 362 Gene3D - 198 266 - -
Dere05g1749 362 MobiDBLite consensus disorder prediction 1 23 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g1749 Dere-ChrDere05 27215937 27222502 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g1749 81 362 Homeobox Transcription Factor Family AT2G22800 52.349 2.29e-72 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Dere05g1749 Homeodomain 6.2e-17 CL0123