Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g1746 ATGGGGAGGGCTCCTTGCTGCGACAAAGCAAACGTGAAGAAAGGGCCTTGGTCCCCAGAAGAAGATGCCAAGCTCAAGGCGTACATCGAAAAGCATGGCACTGGTGGTAACTGGATTGCTTTGCCTCAAAAGATCGCCTCTACGTTAGTATTGGAAGCAGGTATGTGGTCGGTGATAGCAGCACAATTGCCAGGAAGAACAGACAATGACATAAAGAACTACTGGAACACAAGGCTGAAGAAGAAGCTTCTGGAAATTACTGCTGCTGCTACTGCTACTCCACAGTACCCATATTGGCCACGCATGCCTGTGATCTCTCCCATGCCATACTCAAATCATCAAGACCTATGTTTCAACGATCAAGATTCCATCAAAAAATTGCTCATCAAGCTGGGAGGAAGATTTTCTGATGAAGCTGATGATTATCGCCCTACCCTCGGTGCTTTAAATAATATTGCTGATCAATTCCCAGATGGTACTCCCTCCACACAACCAATTTGTGAAGAGCAAGTAAATAGGGCCTCTTCTTCTTGCATGATTAATAACGGTATGATAATGAACAACAACCAAGTAGAGTTGGCCCAGGAGACGGGAGGACTAGAGGAGATTGTATGTAGTAGTACTAGTACTTGTAATACATATTATCCACAAAGATTAGATGGACTGGAATGGTTGTATGGGGAGGATATGACGATGGTCTATGACAAGATAGGCCAACCTACGTATTGGGATGACACAGCCTCTCTCATTTGTCCACATCTTGTAGCTTCTAGTTACCAAGACATGCCGCAACACACGCCGCAGCAACGTGCTTTTCAAGAGTTGAGTTACCACCGGCCATAA 843 0.452 MGRAPCCDKANVKKGPWSPEEDAKLKAYIEKHGTGGNWIALPQKIASTLVLEAGMWSVIAAQLPGRTDNDIKNYWNTRLKKKLLEITAAATATPQYPYWPRMPVISPMPYSNHQDLCFNDQDSIKKLLIKLGGRFSDEADDYRPTLGALNNIADQFPDGTPSTQPICEEQVNRASSSCMINNGMIMNNNQVELAQETGGLEEIVCSSTSTCNTYYPQRLDGLEWLYGEDMTMVYDKIGQPTYWDDTASLICPHLVASSYQDMPQHTPQQRAFQELSYHRP 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g1746 280 ProSiteProfiles Myb-like domain profile. 9 79 IPR001005 -
Dere05g1746 280 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 83 IPR017930 -
Dere05g1746 280 PANTHER OS09G0431300 PROTEIN 55 96 - -
Dere05g1746 280 Pfam Myb-like DNA-binding domain 14 77 IPR001005 -
Dere05g1746 280 SMART sant 13 81 IPR001005 -
Dere05g1746 280 CDD SANT 16 79 IPR001005 -
Dere05g1746 280 SUPERFAMILY Homeodomain-like 8 83 IPR009057 -
Dere05g1746 280 Gene3D - 11 84 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g1746 Dere-ChrDere05 27185485 27186832 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g1746 1 84 MYB Transcription Factor Family AT3G49690 61.017 1.74e-39 138
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Dere05g1746 Myb_DNA-binding 1.2e-12 CL0123