Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g1737 ATGGGTGGTCATGAAAATGCCATGGGGTTTCAACATGGACAAGAGACGACCCTGAATTGTTGTACATCATCGGGTTTGAGCACAAATGTTTCAGAAATCGCAAACAGTTCTGTGCCTATGGCTAAGCCTCCCGTTATAGCAAATCCTTTTCTTGGTTCTTCTTCTTCCACTTGGGATCCCCTTGTTTCACTAAATCAGACTCAAACTTTTGGAGGCTCTTCCATGGTTTCTCACAATGAGTTTGGCAATTCATCTTACCCTCTTGTGCTGGAAAATCAGGGATTGAGTGGCACTTCTCACCTGGTTCAATATATGTCAGACTCCAATTTTGCGGTTCCCTCCTATGCAAGTGGAAGCTTCTCAGAAATGGTTGGCTCTTTCCCCCAACCTGGGTGTTCTGACTTAGCTAATACAAGGTATGGGACAAATTATAATCCAAACGAGGCAGCCATGAAAAGGGCTCCAATAAATGGTACACAATCTCAGCTTGAGGATTCAACTCCCGAAGAAGGAGCCACAGGATCTGCACCTAATGGAAGTAGAAGAAAACGAGGGCTTGATCACAATTCTACGTTCAGTCAAAATAAGAATGCTGAAAGGGAACCAGTAAAGGATTCTTCTGGGAAGAGCTCTGATGGTGTGAAAGAACAAGATGAGAAGAGACAAAAGCTTGAGCAAAATAATACTAATGCAGATTTGCGTGGTAAGCAAGCTAAAGACAACTCTCAAAGTGGAGAAGCTCCCAAAGATAATTTCATTCATGTGAGGGCCCGAAGAGGTCAAGCTACAAACAGCCATAGCCTTGCAGAAAGGGTAAGAAGAGAGAAGATTAGCGAGCGAATGAGGTTGCTTCAAGAACTTGTTCCGGGATGCAACAAGATCACTGGGAAAGCAGTAATGCTGGATGAGATTATTAACTATGTGCAATCGCTGCAGCAACAGGTTGAGTTTTTGTCAATGAAACTTGCCACTGTGAACCCAGAACTGAATTTTGATGTAGAGCGGATCCTATCCAAAGATATTCTCCAGTCGCGCATCGCCAATGGAGCAATTGGAGGATATGGTATGAACTCCTCTCACTCATTCCCTAGTGGAAGTTTTCAGGCAAACCTACCTGGCATACCAAACACATCACCGCCGTTCCCTCCTTTGCCTCAGAGTGTTTTGGACCATGAGTTCCAAAACTTGTATGGAATGGGATACGATTCCAGTACAGATGTCGGACCCAATGCAGGGAGGTTGAAAACGGAGTTGTAA 1257 0.4431 MGGHENAMGFQHGQETTLNCCTSSGLSTNVSEIANSSVPMAKPPVIANPFLGSSSSTWDPLVSLNQTQTFGGSSMVSHNEFGNSSYPLVLENQGLSGTSHLVQYMSDSNFAVPSYASGSFSEMVGSFPQPGCSDLANTRYGTNYNPNEAAMKRAPINGTQSQLEDSTPEEGATGSAPNGSRRKRGLDHNSTFSQNKNAEREPVKDSSGKSSDGVKEQDEKRQKLEQNNTNADLRGKQAKDNSQSGEAPKDNFIHVRARRGQATNSHSLAERVRREKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEFLSMKLATVNPELNFDVERILSKDILQSRIANGAIGGYGMNSSHSFPSGSFQANLPGIPNTSPPFPPLPQSVLDHEFQNLYGMGYDSSTDVGPNAGRLKTEL 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g1737 418 Pfam Helix-loop-helix DNA-binding domain 264 312 IPR011598 GO:0046983
Dere05g1737 418 MobiDBLite consensus disorder prediction 228 248 - -
Dere05g1737 418 MobiDBLite consensus disorder prediction 158 174 - -
Dere05g1737 418 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 261 311 IPR011598 GO:0046983
Dere05g1737 418 MobiDBLite consensus disorder prediction 158 271 - -
Dere05g1737 418 Coils Coil 214 241 - -
Dere05g1737 418 MobiDBLite consensus disorder prediction 198 227 - -
Dere05g1737 418 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 165 359 IPR024097 GO:0006355
Dere05g1737 418 Gene3D - 258 332 IPR036638 GO:0046983
Dere05g1737 418 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 259 329 IPR036638 GO:0046983
Dere05g1737 418 CDD bHLH_AtBPE_like 251 336 - -
Dere05g1737 418 SMART finulus 267 317 IPR011598 GO:0046983
Dere05g1737 418 FunFam Basic helix-loop-helix transcription factor 258 330 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g1737 Dere-ChrDere05 27110571 27112725 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g1737 1 418 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G10120 42.326 3.38e-82 255
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Dere05g1737 HLH 4.4e-06 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere05g1737 05 27110571 27112725 Dere05g1737 05 27110571 27112725 ECH