Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g1734 ATGAAGTCCATGAATGATAGTAGTAACAACGATGGGAATGGGAATAGTAATAATCAAAACTGGTTGGGGTTTTCTCTCTCACCCCACATGAAAATGGAGGTTGCTTCTGGCCCTCCCCTTCATCATCACGATCATCATCAGTATCATCATCAACCCCAGGCTTCTGCTGCTGCTGTTTCTAGCTCTGTTCCAACAACCTTCTGTTTGTCGCCTTCTCAGCTCGGCACCTACGGCATATGTTATGGTGCCGCGGAAAACCCCGCGTTTCATTCTCCTTTGACCGTCATGCCTCTCAAGTCTGATGGCTCACTTTGTATAATGGAAGCTCTCACTAGATCACAAACACAAGTGATGGTGCCGAATTCGTCTCCGAAACTGGAAGACTTTCTTGGTGGTGCAACAATGGGGACTCACGATGCAATGGCTCTAAGTCTGGACAGCATCTACTATAGCACCCAAAACGGAGAGAATCAAACCCACAGAGACCATTCTCTGGACTTTCTTTCCGAGCCCTTAAGGCAACAAGACCCCATCTCTGTCCAATCACATCCTTATTATTCTGGGATTGCTTGCCATAATATTTATCAAGCACCATTGGAGCAACAAAGCAAGGAACCTCAAATGCCCCCAATGCCGGAGGAAGGCGTTGCTTGCTTCAAAAATTGGGTGGCTCCTAGCAGGGACTATCCTGCTCAACAAGGTGTAGAGCAGAAGAAAAATGGAAGCTTGGAGGATGAACACGGAGCTTCTAGGTCTGTAGGTAAAGTAGGTTGTGGGGATTTACAGTCACTTAGCTTATCCGTGAGCCCTGGTTCACAGTCCAGCTGTGTGACTGCTCCACATCAGATCTCCCCTTCCGCGACAGACGTGGTGGCCGTGGAAGCCAAGAAGAGAGGGCCTGGGAGGCTGGGCCAGAAGCAGCCAGTGCATCGGAAATCTATCGACACTTTTGGCCAGAGAACGTCCCAGTATAGAGGCGTCACAAGGCACAGATGGACCGGTAGATATGAAGCACATTTGTGGGATAACAGTTGCAAGAAGGAAGGGCAGACCAGGAAAGGAAGACAAGGGGGCTATGATATGGAAGAGAAAGCTGCAAGAGCCTATGATCTTGCAGCCCTCAAGTACTGGGGATCCTCAACGCATATAAACTTTCCGTTGGAAAACTACCAGGCAGAACTTGAAGAAATGAAGAACATGAGCAGGCAAGAATACGTTGCTCACTTGAGAAGGAAAAGCAGTGGATTTTCGCGAGGGGCTTCAATGTACAGAGGAGTGACAAGGCACCACCAACATGGAAGATGGCAGGCAAGGATAGGTAGAGTTGCTGGAAACAAGGACCTTTATCTTGGAACATTCAGCACTCAGGAGGAAGCAGCCGAAGCATATGACATAGCTGCAATCAAATTCCGCGGGGTGAATGCTGTGACTAATTTCGACATATCTAGGTACGATGTGGAAAGGATCATGGCCAGCAATACTCTTCTGGCTGGTGAGCTGGCTCGACGAAACAAAGAGAGTGAGCCGAGAACTGAGGCCATAGAATACAGTGCAACATCGAACCAGGGCAATGGGGAAGCAGTTCAAGCCCAGAGGAACAACAGGGAAAACGGTTCAGAGTGGAAGATGTTGTATCAGTCTCAAAATGGATGTGACCACAAAGCCATGAACTGCGGAAATTATAGAAATTCAACCATCTCTATGGCCCTACAGGATCTGATAGGAATTGACTCAGTAGGCTCAGGGCAGCCCATGCTGGAGGACACTAACAAGCTAGGCATTCAATTTTCAAACCCATCCTCGCTGGTCACAAGCTTAAGCAGCTCAAGAGAAGGAAGCCCCGATAAATCTGGCCCCACATTGCTGTTCCCAAAGCCTCCGAAGATTATAAGCCCCATAGGTAATGGTGTTAGTTCATGGTTTCCCTCAGCAGCAGCTCAATTGAGGCCAGCTTCTGCGATTTCAATGTCTCATTTGCCAGTTTTCGCTGCTTGGGATGATAGCTGA 2007 0.4838 MKSMNDSSNNDGNGNSNNQNWLGFSLSPHMKMEVASGPPLHHHDHHQYHHQPQASAAAVSSSVPTTFCLSPSQLGTYGICYGAAENPAFHSPLTVMPLKSDGSLCIMEALTRSQTQVMVPNSSPKLEDFLGGATMGTHDAMALSLDSIYYSTQNGENQTHRDHSLDFLSEPLRQQDPISVQSHPYYSGIACHNIYQAPLEQQSKEPQMPPMPEEGVACFKNWVAPSRDYPAQQGVEQKKNGSLEDEHGASRSVGKVGCGDLQSLSLSVSPGSQSSCVTAPHQISPSATDVVAVEAKKRGPGRLGQKQPVHRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCKKEGQTRKGRQGGYDMEEKAARAYDLAALKYWGSSTHINFPLENYQAELEEMKNMSRQEYVAHLRRKSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGVNAVTNFDISRYDVERIMASNTLLAGELARRNKESEPRTEAIEYSATSNQGNGEAVQAQRNNRENGSEWKMLYQSQNGCDHKAMNCGNYRNSTISMALQDLIGIDSVGSGQPMLEDTNKLGIQFSNPSSLVTSLSSSREGSPDKSGPTLLFPKPPKIISPIGNGVSSWFPSAAAQLRPASAISMSHLPVFAAWDDS 668
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g1734 668 CDD AP2 421 482 IPR001471 GO:0003700|GO:0006355
Dere05g1734 668 ProSiteProfiles AP2/ERF domain profile. 323 386 IPR001471 GO:0003700|GO:0006355
Dere05g1734 668 FunFam AP2-like ethylene-responsive transcription factor 421 482 - -
Dere05g1734 668 MobiDBLite consensus disorder prediction 1 52 - -
Dere05g1734 668 Coils Coil 387 407 - -
Dere05g1734 668 CDD AP2 322 386 IPR001471 GO:0003700|GO:0006355
Dere05g1734 668 Gene3D AP2/ERF domain 322 388 IPR036955 GO:0003700|GO:0006355
Dere05g1734 668 Gene3D AP2/ERF domain 422 482 IPR036955 GO:0003700|GO:0006355
Dere05g1734 668 SMART rav1_2 422 486 IPR001471 GO:0003700|GO:0006355
Dere05g1734 668 SMART rav1_2 323 392 IPR001471 GO:0003700|GO:0006355
Dere05g1734 668 MobiDBLite consensus disorder prediction 603 622 - -
Dere05g1734 668 SUPERFAMILY DNA-binding domain 421 482 IPR016177 GO:0003677
Dere05g1734 668 FunFam AP2-like ethylene-responsive transcription factor ANT 322 388 - -
Dere05g1734 668 PRINTS Ethylene responsive element binding protein signature 324 335 IPR001471 GO:0003700|GO:0006355
Dere05g1734 668 PRINTS Ethylene responsive element binding protein signature 462 482 IPR001471 GO:0003700|GO:0006355
Dere05g1734 668 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 119 549 - -
Dere05g1734 668 Pfam AP2 domain 423 472 IPR001471 GO:0003700|GO:0006355
Dere05g1734 668 Pfam AP2 domain 323 378 IPR001471 GO:0003700|GO:0006355
Dere05g1734 668 SUPERFAMILY DNA-binding domain 322 388 IPR016177 GO:0003677
Dere05g1734 668 ProSiteProfiles AP2/ERF domain profile. 422 480 IPR001471 GO:0003700|GO:0006355
Dere05g1734 668 MobiDBLite consensus disorder prediction 1 25 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g1734 Dere-ChrDere05 27066739 27069929 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g1734 403 668 AP2-EREBP Transcription Factor Family AT4G37750 27.333 2.44e-13 71.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Dere05g1734 AP2 8.4e-10 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere05g1734 05 27066739 27069929 Dere04g0362 04 3712727 3715541 CCT
Dere05g1734 05 27066739 27069929 Dere05g1734 05 27066739 27069929 ECH