Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g1732 ATGGATTCGGATCAAGCCAAGCTGTTTGTGGGCGGCATTTCCCGGGACACCACAGAAGATGTTTTGAAAGACCACTTCGCCAAGTACGGTTCTGTTTTGGGTTCTACGATTTCGGTGGACCGTACCACCAAAATTCCTAGAGGTTTTGGCTTCGTTAGGTTCTCTGATCTTTCCGCAGCTGATAAAGCCCTTCAAGACACCCATGTCATACAAGGAAGAACGGTAGAAGTGAAGAAAGCAATACCCAGAAGCGAACAGCAACACCAAAATCTACCCCAGACTAGAGGGACGAGTAACTGTAGTAACAATGACAGTAGCAACGATCATGTTAGCACTAAAAAGGTATTTGTTGGAGGCTTATCAGCTAGTATATCGGAGGACGAGTTTAAGAAATATTTCGAGAGGTTTGGTAGAATAACGGATGTAGTGGTGATGCAGGACAGTGTAACTCACCGGCCTAGGGGGTTTGGCTTCATTACTTTTGATTCGGAAGAATCTGTTGAAAATGTGATGACGAAAAGCTTTCACGACTTAAATGGTAGACAGGTGGAGGTCAAGAGGGCTGTGCCGAAAGAGGGGAACAATGGTTTTGATGGTGTTAATAGAACGAGATACAAGAATGGAAGAGGAGCCCCTAAAAGTTCTCCTCACTATAGTCCCAGGTATATGCCCCCAGCGTATGCGCCTTTTCCCTGGTATGGTGGTGATGGAGTATATTTTTATGGATCTAACATGTATGGTTGTTGGTTCCCCATGGGAGGGTATGGTTGCAATGGATCTGCGGTTCCATTTGATGCTCCTAGGAACTTTTGGTATGGCCCCTTGGCAACCGGTGCTCAGACTTTCCAGGTCCCTTATGCTTCTCCAACTCCTGCGTATGTGAGTGGTAGGGGTGGACTAGTTGGCGCTGAAATTAGGGGGTACAACAGCATTGCTGGATCTGCAGCGAGTGTTAAGTTTAATCAAGTCTTCAGTGTCAATGGATATCTACCAGCTGATGTGACGTCGCCTAAGATTGAAGAGGTAAAGCCGGAAGTTGAGACTCCAAGTTTCAAAGGAAGCAATGCTGAAGCTTCTAGTTAA 1083 0.4598 MDSDQAKLFVGGISRDTTEDVLKDHFAKYGSVLGSTISVDRTTKIPRGFGFVRFSDLSAADKALQDTHVIQGRTVEVKKAIPRSEQQHQNLPQTRGTSNCSNNDSSNDHVSTKKVFVGGLSASISEDEFKKYFERFGRITDVVVMQDSVTHRPRGFGFITFDSEESVENVMTKSFHDLNGRQVEVKRAVPKEGNNGFDGVNRTRYKNGRGAPKSSPHYSPRYMPPAYAPFPWYGGDGVYFYGSNMYGCWFPMGGYGCNGSAVPFDAPRNFWYGPLATGAQTFQVPYASPTPAYVSGRGGLVGAEIRGYNSIAGSAASVKFNQVFSVNGYLPADVTSPKIEEVKPEVETPSFKGSNAEASS 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g1732 360 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 1 300 - -
Dere05g1732 360 FunFam Heterogeneous nuclear ribonucleoprotein A2/B1 108 192 - -
Dere05g1732 360 SUPERFAMILY RNA-binding domain, RBD 3 100 IPR035979 GO:0003676
Dere05g1732 360 MobiDBLite consensus disorder prediction 80 108 - -
Dere05g1732 360 Gene3D - 87 205 IPR012677 -
Dere05g1732 360 MobiDBLite consensus disorder prediction 191 216 - -
Dere05g1732 360 SMART rrm1_1 114 186 IPR000504 GO:0003723
Dere05g1732 360 SMART rrm1_1 7 78 IPR000504 GO:0003723
Dere05g1732 360 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 113 190 IPR000504 GO:0003723
Dere05g1732 360 MobiDBLite consensus disorder prediction 84 108 - -
Dere05g1732 360 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 82 IPR000504 GO:0003723
Dere05g1732 360 CDD RRM2_Hrp1p 114 191 - -
Dere05g1732 360 SUPERFAMILY RNA-binding domain, RBD 104 211 IPR035979 GO:0003676
Dere05g1732 360 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 115 182 IPR000504 GO:0003723
Dere05g1732 360 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8 75 IPR000504 GO:0003723
Dere05g1732 360 Gene3D - 1 86 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g1732 Dere-ChrDere05 27050176 27051564 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g1732 8 263 Eukaryotic Initiation Factors Gene Family AT4G34110 27.099 4.24e-15 74.7